2AZC

HIV-1 Protease NL4-3 6X mutant

Structural Biology Knowledgebase: 2AZC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.227

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2AZC

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 23317.78

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEASE RETROPEPSIN A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: Q7K, L24I, S37N, M46I, F53L, L63P, V77I, V82A
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3TL
Query on 3TL

A, B benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10- dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13- bis(1-methylethyl)-2,5,12,15,18-pentaoxo- 20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos- 1-yl]carbamate
TL-3, C2 symmetric inhibitor (Synonym)
C50 H64 N6 O10
BJJPNOGMLLUCER-KUTQPOQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3TL N/A in BindingDB
IC50: 183 nM  BindingMOAD
N/A in PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000434 (VAL,ALA,PHQ,PHL) A, B N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.227
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 100.24 α = 90.00
b = 100.24 β = 90.00
c = 97.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-10
  • Released Date: 2006-02-28
  • Deposition author(s): Heaslet, H., Kutilek, V., Morris, G.M., Lin, Y-C., Elder, J.H., Torbett, B.E., Stout, C.D.

Revision History

  • 2013-02-27
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description