2APO

Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 2APO

Classification: Isomerase / RNA binding protein

Total Structure Weight: 48566.63

Macromolecule Entities
Molecule Chains Length Organism Details
Probable tRNA pseudouridine synthase B A 357 Methanocaldococcus jannaschii EC#: 5.4.99 IUBMB
Gene Name(s): truB MJ0148
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosome biogenesis protein Nop10 B 60 Methanocaldococcus jannaschii Mutation: M401M, M404M, M406M, M448M
Gene Name(s): nop10 MJ0116.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.202
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 118.29 α = 90.00
b = 63.19 β = 102.62
c = 67.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-08-16
  • Released Date: 2005-11-15
  • Deposition author(s): Hamma, T., Reichow, S.L., Varani, G., Ferre-D'Amare, A.R.

Revision History

  • Version 1_0: 2005-11-15

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance