Structural basis of sulfatide presentation by mouse CD1d
2AKR
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System
    Structure Weight: 91897.67
    Molecule: T-cell surface glycoprotein CD1d1
    Polymer: 1 Type: protein Length: 285
    Chains: A, C
    Fragment: extracellular domain, residues 19-297
    Organism: Mus musculus
    Gene Names: Cd1d1 Cd1.1
    UniProtKB: Protein Feature View | Search PDB | P11609  
    Molecule: Beta-2-microglobulin
    Polymer: 2 Type: protein Length: 99
    Chains: B, D
    Fragment: residues 21-119
    Organism: Mus musculus
    Gene Name: B2m
    UniProtKB: Protein Feature View | Search PDB | P01887  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Spodoptera frugiperda  
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1CD1   Crystal structure of mouse CD1d antigen presenting molecule 
    1Z5L   Crystal structure of mouse CD1d-short chain alpha galactosyl ceramide complex 
    1ZHN   Crystal structure of mouse CD1d-phosphatidyl choline 
    1ZT4   Crystal structure of human CD1d with and without alpha galactosyl ceramide 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CIS
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    CIS C48 H91 N O11 S
    (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO- BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC- 3-ENYL)TETRACOS-15-ENAMIDE
    CIS:2AKR
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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