2AGE

Succinyl-AAPR-trypsin acyl-enzyme at 1.15 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.138
  • R-Value Work: 0.119

Literature

Macromolecules
Sequence Display for 2AGE

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 23878.92

Macromolecule Entities
Molecule Chains Length Organism Details
beta-trypsin X 223 Bos taurus EC#: 3.4.21.4 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
succinyl-Ala-Ala-Pro-Arg A 5 synthetic

Membrane Protein

Source: inferred by homology | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamABCDE complex of the Bam β-barrel assembly machine


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

X CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000351
Query on PRD_000351
A SUCCINYL-ALA-ALA-PRO-ARG Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.138
  • R-Value Work: 0.119
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 61.95 α = 90.00
b = 63.72 β = 90.00
c = 69.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-26
  • Released Date: 2006-05-16
  • Deposition author(s): Radisky, E.S., Lee, J.M., Lu, C.J., Koshland Jr., D.E.

Revision History

  • Version 1_0: 2006-05-16

    Type: Initial release

  • Version 1_1: 2008-04-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance

  • Version 1_3: 2012-12-12

    Type: Other

  • Version 1_4: 2017-10-11

    Type: Advisory, Refinement description