2AG5

Crystal Structure of Human DHRS6

Structural Biology Knowledgebase: 2AG5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2AG5

Classification: OXIDOREDUCTASE

Total Structure Weight: 110281.94

Macromolecule Entities
Molecule Chains Length Organism Details
dehydrogenase/reductase (SDR family) member 6 A, B, C, D 246 Homo sapiens Gene Name(s): BDH2 Gene View DHRS6 SDR15C1 UNQ6308/PRO20933
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.167
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.09 α = 106.05
b = 62.06 β = 105.95
c = 74.04 γ = 100.97

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-26
  • Released Date: 2005-08-09
  • Deposition author(s): Kunde, G., Lukacik, P., Papagrigoriou, E., Sundstrom, M., Arrowsmith, C., Weigelt, J., Edwards, A., Von Delft, F., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2012-03-14
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4