2A1X

Human phytanoyl-coa 2-hydroxylase in complex with iron and 2-oxoglutarate

Structural Biology Knowledgebase: 2A1X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.204

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2A1X

Classification: OXIDOREDUCTASE

Total Structure Weight: 35692.89

Macromolecule Entities
Molecule Chains Length Organism Details
Phytanoyl-CoA dioxygenase A 308 Homo sapiens EC#: 1.14.11.18 IUBMB
Gene Name(s): PHYH Gene View PAHX
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AKG
Query on AKG

A 2-OXOGLUTARIC ACID
C5 H6 O5
KPGXRSRHYNQIFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.204
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.93 α = 90.00
b = 86.68 β = 90.00
c = 97.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-06-21
  • Released Date: 2005-08-16
  • Deposition author(s): Kavanagh, K.L., McDonough, M.A., Searles, T., Butler, D., Bunkoczi, G., Von Delft, F., Edwards, A., Arrowsmith, C., Sundstrom, M., Schofield, C.J., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor