2A08

Structure of the yeast YHH6 SH3 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.173 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

3-D proteome of yeast SH3 domains

Kursula, P.Kursula, I.Song, Y.H.Lehmann, F.Zou, P.Wilmanns, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hypothetical 41.8 kDa protein in SPO13-ARG4 intergenic region
A, B
60Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P32793 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32793 
Go to UniProtKB:  P32793
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32793
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.173 
  • Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.83α = 90
b = 66.83β = 90
c = 52.68γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata scaling
MOLREPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-06-27
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-11
    Changes: Refinement description
  • Version 1.4: 2018-01-24
    Changes: Database references, Structure summary
  • Version 1.5: 2023-08-23
    Changes: Data collection, Database references, Refinement description