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Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.
DOI:10.2210/pdb1yl3/pdb   NDB ID: RR0119
1YL3
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
1YL3   1YL4  
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The complete entry has been assigned PDB ID 4V4P and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v4p.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v4p.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1451043.40
    Molecule: 5S ribosomal RNA
    Polymer: 1 Type: rna Length: 123
    Chains: B
    Organism Thermus thermophilus HB8
    Molecule: 23S ribosomal RNA
    Polymer: 2 Type: rna Length: 2915
    Chains: A
    Organism Thermus thermophilus HB8
    Molecule: 50S ribosomal protein L1
    Polymer: 3 Type: protein Length: 228
    Chains: C
    Organism Thermus thermophilus HB8
    Gene Names rplA TTHA0246
    UniProtKB:   Protein Feature View | Search PDB | Q5SLP7  
    Molecule: 50S ribosomal protein L2
    Polymer: 4 Type: protein Length: 178
    Chains: D
    Organism Thermus thermophilus HB8
    Gene Names rplB TTHA1689
    UniProtKB:   Protein Feature View | Search PDB | P60405  
    Molecule: 50S ribosomal protein L3
    Polymer: 5 Type: protein Length: 338
    Chains: E
    Organism Thermus thermophilus HB8
    Gene Names rplC TTHA1692
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN8  
    Molecule: 50S ribosomal protein L4
    Polymer: 6 Type: protein Length: 246
    Chains: F
    Organism Thermus thermophilus HB8
    Molecule: 50S ribosomal protein L5
    Polymer: 7 Type: protein Length: 176
    Chains: G
    Organism Thermus thermophilus HB8
    Gene Names rpl5 rrnAC1598
    UniProtKB:   Protein Feature View | Search PDB | P14124  
    Molecule: 50S ribosomal protein L6
    Polymer: 8 Type: protein Length: 177
    Chains: H
    Organism Thermus thermophilus HB8
    Gene Names rplF TTHA1677
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ3  
    Molecule: 50S ribosomal protein L7/L12
    Polymer: 9 Type: protein Length: 128
    Chains: I, J
    Organism Thermus thermophilus HB8
    Gene Names rplL TTHA0210
    UniProtKB:   Protein Feature View | Search PDB | Q8VVE2  
    Molecule: 50S ribosomal protein L9
    Polymer: 10 Type: protein Length: 149
    Chains: K
    Organism Thermus thermophilus HB8
    Gene Names rplI TTHA0242
    UniProtKB:   Protein Feature View | Search PDB | Q5SLQ1  
    Molecule: 50S ribosomal protein L11
    Polymer: 11 Type: protein Length: 141
    Chains: L
    Organism Thermus thermophilus HB8
    Gene Names rplK TTHA0247
    UniProtKB:   Protein Feature View | Search PDB | Q5SLP6  
    Molecule: 50S ribosomal protein L13
    Polymer: 12 Type: protein Length: 145
    Chains: M
    Organism Thermus thermophilus HB8
    Molecule: 50S ribosomal protein L14
    Polymer: 13 Type: protein Length: 122
    Chains: N
    Organism Thermus thermophilus HB8
    Gene Names rplN TTHA1682
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP8  
    Molecule: 50S ribosomal protein L15
    Polymer: 14 Type: protein Length: 164
    Chains: O
    Organism Thermus thermophilus HB8
    Gene Names rpl15p rrnAC1590
    UniProtKB:   Protein Feature View | Search PDB | P12737  
    Molecule: 50S ribosomal protein L16
    Polymer: 15 Type: protein Length: 138
    Chains: P
    Organism Thermus thermophilus HB8
    Molecule: 50S ribosomal protein L18
    Polymer: 16 Type: protein Length: 186
    Chains: Q
    Organism Thermus thermophilus HB8
    Gene Names rpl18p rrnAC1593
    UniProtKB:   Protein Feature View | Search PDB | P14123  
    Molecule: 50S ribosomal protein L19
    Polymer: 17 Type: protein Length: 66
    Chains: R
    Organism Thermus thermophilus HB8
    Gene Names rpl24e rrnAC0104
    UniProtKB:   Protein Feature View | Search PDB | P14116  
    Molecule: 50S ribosomal protein L22
    Polymer: 18 Type: protein Length: 113
    Chains: S
    Organism Thermus thermophilus HB8
    Gene Names rplV TTHA1687
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP3  
    Molecule: 50S ribosomal protein L23
    Polymer: 19 Type: protein Length: 84
    Chains: T
    Organism Thermus thermophilus HB8
    Gene Names rpl23p rrnAC1609
    UniProtKB:   Protein Feature View | Search PDB | P12732  
    Molecule: 50S ribosomal protein L24
    Polymer: 20 Type: protein Length: 119
    Chains: U
    Organism Thermus thermophilus HB8
    Gene Names rpl24p rrnAC1601
    UniProtKB:   Protein Feature View | Search PDB | P10972  
    Molecule: 50S general stress protein CTC (L25)
    Polymer: 21 Type: protein Length: 253
    Chains: V
    Organism Thermus thermophilus HB8
    Gene Names rplY ctc DR_0427
    UniProtKB:   Protein Feature View | Search PDB | Q9RX88  
    Molecule: 50S ribosomal protein L29
    Polymer: 22 Type: protein Length: 70
    Chains: W
    Organism Thermus thermophilus HB8
    Gene Names rpl29p rrnAC1604
    UniProtKB:   Protein Feature View | Search PDB | P10971  
    Molecule: 50S ribosomal protein L30
    Polymer: 23 Type: protein Length: 60
    Chains: X
    Organism Thermus thermophilus HB8
    Gene Names rpmD TTHA1674
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ6  
    Molecule: 50S ribosomal protein L17
    Polymer: 24 Type: protein Length: 118
    Chains: 0
    Organism Thermus thermophilus HB8
    Gene Names rplQ rpl17 TTHA1663
    UniProtKB:   Protein Feature View | Search PDB | Q9Z9H5  
    Molecule: 50S ribosomal protein L20
    Polymer: 25 Type: protein Length: 118
    Chains: 1
    Organism Thermus thermophilus HB8
    Gene Names rplT TTHA0553
    UniProtKB:   Protein Feature View | Search PDB | P60491  
    Molecule: 50S ribosomal protein L21
    Polymer: 26 Type: protein Length: 100
    Chains: 2
    Organism Thermus thermophilus HB8
    Gene Names rplU TTHA1783
    UniProtKB:   Protein Feature View | Search PDB | P60492  
    Molecule: 50S ribosomal protein L27
    Polymer: 27 Type: protein Length: 91
    Chains: 3
    Organism Thermus thermophilus HB8
    Gene Names rpmA TTHA1782
    UniProtKB:   Protein Feature View | Search PDB | P60493  
    Molecule: 50S ribosomal protein L31
    Polymer: 28 Type: protein Length: 73
    Chains: 4
    Organism Thermus thermophilus HB8
    Gene Names rpmE TTHA1073
    UniProtKB:   Protein Feature View | Search PDB | Q5SJE1  
    Molecule: 50S ribosomal protein L32
    Polymer: 29 Type: protein Length: 60
    Chains: 5
    Organism Thermus thermophilus HB8
    Gene Names rpmF rpl32 TTHA0418
    UniProtKB:   Protein Feature View | Search PDB | P80339  
    Molecule: 50S ribosomal protein L33
    Polymer: 30 Type: protein Length: 82
    Chains: 6
    Organism Thermus thermophilus HB8
    Gene Names rpmG DR_2049
    UniProtKB:   Protein Feature View | Search PDB | Q9RSS4  
    Molecule: 50S ribosomal protein L34
    Polymer: 31 Type: protein Length: 47
    Chains: 7
    Organism Thermus thermophilus HB8
    Gene Names rpmH DR_2152
    UniProtKB:   Protein Feature View | Search PDB | Q9RSH2  
    Molecule: 50S ribosomal protein L35
    Polymer: 32 Type: protein Length: 64
    Chains: 8
    Organism Thermus thermophilus HB8
    Gene Names rpmI TTHA0552
    UniProtKB:   Protein Feature View | Search PDB | Q5SKU1  
    Molecule: 50S ribosomal protein L36
    Polymer: 33 Type: protein Length: 36
    Chains: 9
    Organism Thermus thermophilus HB8
    Gene Names rpmJ TTHA1668
    UniProtKB:   Protein Feature View | Search PDB | Q5SHR2  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 24
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 26
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 27
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 28
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 29
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 30
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 31
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 32
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 33
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1giy  The large subunit of 70S ribosome 
    1nkw  Structure of the large subunit of 70S ribosome from Deinococcus radiodurans 
    1YL4  The small subunit of the same structure, with mRNA and tRNAs 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0119
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (1YL3 and 1YL4)