1WV3

Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus

PDB DOI: https://doi.org/10.2210/pdb1WV3/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Staphylococcus aureus subsp. aureus Mu50
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2004-12-10 Released: 2005-12-20
Deposition Author(s): Tanaka, Y., Yasutake, Y., Tanaka, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.222
R-Value Work: 0.195

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.

Tanaka, Y., Kuroda, M., Yasutake, Y., Yao, M., Tsumoto, K., Watanabe, N., Ohta, T., Tanaka, I.

(2007) Proteins 69: 659-664

PubMed: 17680693 Search on PubMed
DOI: https://doi.org/10.1002/prot.21302
Primary Citation of Related Structures:
1WV3

Organizational Affiliation

Faculty of Advanced Life Sciences, Graduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan.

Macromolecule Content

Total Structure Weight: 28 kDa
Atom Count: 1,698
Modelled Residue Count: 186
Deposited Residue Count: 238
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
similar to DNA segregation ATPase and related proteins	A	238	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 6 Gene Names: SAV0287
UniProt
Find proteins for Q8NYF3 (Staphylococcus aureus (strain MW2)) Explore Q8NYF3 Go to UniProtKB: Q8NYF3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8NYF3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.222
R-Value Work: 0.195
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.368	α = 90
b = 66.01	β = 90
c = 88.287	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
CNS	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2005-12-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-12-20
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.