1W8M

ENZYMATIC AND STRUCTURAL CHARACTERISATION OF NON PEPTIDE LIGAND CYCLOPHILIN COMPLEXES

Structural Biology Knowledgebase: 1W8M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.130

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1W8M

Classification: ISOMERASE

Total Structure Weight: 18221.82

Macromolecule Entities
Molecule Chains Length Organism Details
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A A 165 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): PPIA Gene View CYPA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
E1P
Query on E1P

A ETHYL OXO(PIPERIDIN-1-YL)ACETATE
C9 H15 N O3
ASBDXHCMVYVJQQ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
E1P N/A in BindingDB
Ki: 25000000 nM  BindingMOAD
Ki: 25000000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.130
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 36.31 α = 90.00
b = 54.54 β = 90.00
c = 71.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-24
  • Released Date: 2004-09-30
  • Deposition author(s): Kontopidis, G., Taylor, P., Walkinshaw, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4