1W8L

ENZYMATIC AND STRUCTURAL CHARACTERIZATION OF NON PEPTIDE LIGAND CYCLOPHILIN COMPLEXES

Structural Biology Knowledgebase: 1W8L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.179

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1W8L

Classification: ISOMERASE

Total Structure Weight: 18177.85

Macromolecule Entities
Molecule Chains Length Organism Details
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A A 165 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): PPIA Gene View CYPA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1P3
Query on 1P3

A (3R)-1-ACETYL-3-METHYLPIPERIDINE
C8 H15 N O
XKFPNHDGLSYZRC-SSDOTTSWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1P3 N/A in BindingDB
Ki: 320000000 nM  BindingMOAD
Ki: 320000000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.179
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 36.09 α = 90.00
b = 54.31 β = 90.00
c = 70.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-23
  • Released Date: 2004-09-30
  • Deposition author(s): Kontopidis, G., Taylor, P., Walkinshaw, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4