STRUCTURE OF NEURAMINIDASE FROM ENGLISH DUCK SUBTYPE N6 COMPLEXED WITH 30 MM SIALIC ACID (NANA, NEU5AC), CRYSTAL SOAKED FOR 43 HOURS AT 291 K. DOI:10.2210/pdb1w21/pdb

1W21   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 180407.34 Molecule: NEURAMINIDASE Polymer: 1 Type: protein Length: 389 Chains: A, B, C, D EC#: 3.2.1.18    Organism Influenza A virus Gene Name NA UniProtKB:   Protein Feature View | Search PDB | Q6XV27         Source Hide Polymer: 1 Scientific Name: Influenza a virus   Taxonomy   Expression System: Gallus gallus       Related PDB Entries Hide Identifier Details 1A14  COMPLEX BETWEEN NC10 ANTI-INFLUENZA VIRUS NEURAMINIDASE SINGLE CHAIN ANTIBODY WITH A 5 RESIDUE LINKER AND INFLUENZA VIRUS NEURAMINIDASE  1A4G  INFLUENZA VIRUS B/BEIJING/1/87 NEURAMINIDASE COMPLEXED WITH ZANAMIVIR  1A4Q  INFLUENZA VIRUS B/BEIJING/1/87 NEURAMINIDASE COMPLEXED WITH DIHYDROPYRAN-PHENETHYL-PROPYL- CARBOXAMIDE  1B9S  NOVEL AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE MAKE SELECTIVE INTERACTIONS WITH CONSERVED RESIDUES AND WATER MOLECULES IN THE ACTIVE SITE  1B9T  NOVEL AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE MAKE SELECTIVE INTERACTIONS WITH CONSERVED RESIDUES AND WATER MOLECULES IN THE ACTIVE SITE  1B9V  NOVEL AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE MAKE SELECTIVE INTERACTIONS WITH CONSERVED RESIDUES AND WATER MOLECULES IN TEH ACTIVE SITE  1BJI  THE X-RAY STRUCTURE OF A COMPLEX OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE COMPLEXED WITH THE GLAXO 6-CARBOXAMIDE SIALIC ACID ANALOGUE GR217029  1E8T  STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE  1E8U  STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE  1E8V  STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE  1EUU  SIALIDASE OR NEURAMINIDASE, LARGE 68KD FORM  1F8B  NATIVE INFLUENZA VIRUS NEURAMINIDASE IN COMPLEX WITHNEU5AC2EN  1F8C  NATIVE INFLUENZA NEURAMINIDASE IN COMPLEX WITH 4-AMINO-2-DEOXY-2,3-DEHYDRO-N- NEURAMINIC ACID  1F8D  NATIVE INFLUENZA NEURAMINIDASE IN COMPLEX WITH 9-AMINO-2-DEOXY-2,3-DEHYDRO-N- NEURAMINIC ACID  1F8E  NATIVE INFLUENZA NEURAMINIDASE IN COMPLEX WITH 4,9-DIAMINO-2-DEOXY-2,3-DEHYDRO-N- ACETYL-NEURAMINIC ACID  1INF  INFLUENZA VIRUS B/LEE/40 NEURAMINIDASE COMPLEXED WITH BANA113 INHIBITOR  1ING  INFLUENZA A SUBTYPE N2 NEURAMINIDASE COMPLEXED WITH AROMATIC BANA109 INHIBITOR  1INH  INFLUENZA A SUBTYPE N2 NEURAMINIDASE COMPLEXED WITH AROMATIC BANA111 INHIBITOR  1INV  INFLUENZA B/LEE/40 NEURAMINIDASE (SIALIDASE) COMPLEXED WITH EPANA INHIBITOR (4-ACETAMIDO- 2,4-DIDEOXY-D-GLYCERO-ALPHA-D-GALACTO-1 -OCTOPYRANOSYL) PHOSPHONIC ACID  1INW  INFLUENZA A SUBTYPE N2 NEURAMINIDASE ( SIALIDASE) COMPLEXED WITH APANA INHIBITOR (4- ACETAMIDO- 2,4-DIDEOXY-D-GLYCERO-BETA-D- GALACTO-1-OCTOPYRANOSYL) PHOSPHONIC ACID  1INX  INFLUENZA A SUBTYPE N2 NEURAMINIDASE ( SIALIDASE) COMPLEXED WITH EPANA INHIBITOR (4- ACETAMIDO- 2,4-DIDEOXY-D-GLYCERO-ALPHA-D- GALACTO-1-OCTOPYRANOSYL) PHOSPHONIC ACID  1INY  INFLUENZA A SUBTYPE N9 NEURAMINIDASE ( SIALIDASE) COMPLEXED WITH EPANA INHIBITOR (4- ACETAMIDO- 2,4-DIDEOXY-D-GLYCERO-ALPHA-D- GALACTO-1-OCTOPYRANOSYL) PHOSPHONIC ACID  1IVB  INFLUENZA VIRUS B/LEE/40 NEURAMINIDASE ( SIALIDASE) COMPLEXED WITH BANA105 INHIBITOR (4 -(ACETYLAMINO)-3-HYDROXY-5-NITROBENZOIC ACID )  1IVC  INFLUENZA A SUBTYPE N2 NEURAMINIDASE ( SIALIDASE) COMPLEXED WITH AROMATIC BANA106 INHIBITOR (4-(ACETYLAMINO)-5-AMINO-3- HYDROXYBENZOIC ACID)  1IVD  INFLUENZA A SUBTYPE N2 NEURAMINIDASE ( SIALIDASE) COMPLEXED WITH AROMATIC BANA105 INHIBITOR (4-(ACETYLAMINO)-3-HYDROXY-5- NITROBENZOIC ACID)  1IVE  INFLUENZA A SUBTYPE N2 NEURAMINIDASE ( SIALIDASE) COMPLEXED WITH AROMATIC BANA108 INHIBITOR (4-(ACETYLAMINO)-3-AMINOBENZOIC ACID )  1IVF  INFLUENZA A SUBTYPE N2 NEURAMINIDASE ( SIALIDASE) COMPLEXED WITH DANA INHIBITOR (2- DEOXY-2,3-DIDEHYDRO-D-N-ACETYLNEURAMINIC ACID)  1IVG  INFLUENZA A SUBTYPE N2 NEURAMINIDASE ( SIALIDASE)  1KIT  VIBRIO CHOLERAE NEURAMINIDASE  1L7F  CRYSTAL STRUCTURE OF INFLUENZA VIRUS NEURAMINIDASE INCOMPLEX WITH BCX-1812  1L7G  CRYSTAL STRUCTURE OF E119G MUTANT INFLUENZA VIRUSNEURAMINIDASE IN COMPLEX WITH BCX-1812  1L7H  CRYSTAL STRUCTURE OF R292K MUTANT INFLUENZA VIRUSNEURAMINIDASE IN COMPLEX WITH BCX-1812  1MWE  THE X-RAY STRUCTURE OF A COMPLEX OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE COMPLEXED WITH SIALIC ACID AT 4 DEGREES C REVEALING A SECOND SIALIC ACID BINDING SITE  1NCA  N9 NEURAMINIDASE-NC41 COMPLEX WITH FAB  1NCB  N9 NEURAMINIDASE-NC41 MUTANT WITH ASN 329 REPLACED BY ASP (N329D) COMPLEX WITH FAB  1NCC  N9 NEURAMINIDASE-NC41 MUTANT WITH ILE 368 REPLACED BY ARG (I368R) COMPLEX WITH FAB  1NCD  N9 NEURAMINIDASE-NC41 COMPLEX WITH FAB  1NMA  MOL_ID: 1; MOLECULE: N9 NEURAMINIDASE; CHAIN : N; EC: 3.2.1.18; MUTATION: WILD TYPE ; MOL_ID: 2; MOLECULE: FAB NC10; CHAIN: L , H; OTHER_DETAILS: RESOLUTION OF 3.0 ANGSTROMS  1NMB  MOL_ID: 1; MOLECULE: N9 NEURAMINIDASE; CHAIN : N; EC: 3.2.1.18; MUTATION: WILD TYPE ; MOL_ID: 2; MOLECULE: FAB NC10; CHAIN: L , H; OTHER_DETAILS: RESOLUTION OF 2.5 ANGSTROMS  1NMC  COMPLEX BETWEEN NC10 ANTI-INFLUENZA VIRUS NEURAMINIDASE SINGLE CHAIN ANTIBODY WITH A 15 RESIDUE LINKER AND INFLUENZA VIRUS NEURAMINIDASE  1NN2  NEURAMINIDASE  1NNA  NEURAMINIDASE (SIALIDASE)  1NNB  NEURAMINIDASE (SIALIDASE) COMPLEXED WITH 2- DEOXY-2,3-DEHYDRO-N-ACETYL NEURAMINIC ACID  1NNC  INFLUENZA VIRUS NEURAMINIDASE SUBTYPE N9 (TERN ) COMPLEXED WITH 4-GUANIDINO-NEU5AC2EN INHIBITOR  1NSB  NEURAMINIDASE (SIALIDASE)  1NSC  NEURAMINIDASE (SIALIDASE) COMPLEX WITH N- ACETYL NEURAMINIC ACID (SIALIC ACID)  1NSD  NEURAMINIDASE (SIALIDASE) COMPLEX WITH 2,3- DEHYDRO-2-DEOXY-N-ACETYL NEURAMINIC ACID ( DANA)  1USR  NEWCASTLE DISEASE VIRUS HEMAGGLUTININ- NEURAMINIDASE COMPLEXED WITH THIOSIALOSIDE  1USX  CRYSTAL STRUCTURE OF THE NEWCASTLE DISEASE VIRUS HEMAGGLUTININ-NEURAMINIDASE COMPLEXED WITH THIOSIALOSIDE  1V0Z  STRUCTURE OF NEURAMINIDASE FROM ENGLISH DUCK SUBTYPE N6.  1V2I  STRUCTURE OF THE HEMAGGLUTININ-NEURAMINIDASE FROM HUMANPARAINFLUENZA VIRUS TYPE III  1V3B  STRUCTURE OF THE HEMAGGLUTININ-NEURAMINIDASE FROM HUMANPARAINFLUENZA VIRUS TYPE III  1V3C  STRUCTURE OF THE HEMAGGLUTININ-NEURAMINIDASE FROM HUMANPARAINFLUENZA VIRUS TYPE III: COMPLEX WITH NEU5AC  1V3D  STRUCTURE OF THE HEMAGGLUTININ-NEURAMINIDASE FROM HUMANPARAINFLUENZA VIRUS TYPE III: COMPLEX WITH NEU5AC2EN  1V3E  STRUCTURE OF THE HEMAGGLUTININ-NEURAMINIDASE FROM HUMANPARAINFLUENZA VIRUS TYPE III: COMPLEX WITH ZANAMAVIR  1VCJ  INFLUENZA B VIRUS NEURAMINIDASE COMPLEXED WITH 1-(4-CARBOXY-2-(3-PENTYLAMINO)PHENYL)-5 -AMINOMETHYL-5-HYDROXYMETHYL-PYRROLIDIN-2-ONE  1W1X  STRUCTURE OF NEURAMINIDASE FROM ENGLISH DUCK SUBTYPE N6 COMPLEXED WITH 30 MM SIALIC ACID (NANA, NEU5AC), CRYSTAL SOAKED FOR 3 HOURS AT 277 K.  1W20  STRUCTURE OF NEURAMINIDASE FROM ENGLISH DUCK SUBTYPE N6 COMPLEXED WITH 30 MM SIALIC ACID (NANA, NEU5AC), CRYSTAL SOAKED FOR 3 HOURS AT 291 K  1W8N  CONTRIBUTION OF THE ACTIVE SITE ASPARTIC ACID TO CATALYSIS IN THE BACTERIAL NEURAMINIDASE FROM MICROMONOSPORA VIRIDIFACIENS.  1W8O  CONTRIBUTION OF THE ACTIVE SITE ASPARTIC ACID TO CATALYSIS IN THE BACTERIAL NEURAMINIDASE FROM MICROMONOSPORA VIRIDIFACIENS  1XOE  N9 TERN INFLUENZA NEURAMINIDASE COMPLEXED WITH (2R,4R,5R)-5-(1-ACETYLAMINO-3-METHYL- BUTYL-PYRROLIDINE-2, 4-DICAROBYXYLIC ACID 4 -METHYL ESTERDASE COMPLEXED WITH  1XOG  N9 TERN INFLUENZA NEURAMINIDASE COMPLEXED WITH A 2,5-DISUBSTITUTED TETRAHYDROFURAN-5- CARBOXYLIC ACID  1Z4V  PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ- NEURAMINIDASE(HN) WITH LIGAND DANA (SOAKED WITH DANA, PH 7.0)  1Z4W  PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ- NEURAMINIDASE(HN) WITH LIGAND DANA (SOAKED WITH DANA, PH8.0)  1Z4X  PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ- NEURAMINIDASE(HN) WITH LIGAND SIALYLLACTOSE ( SOAKED WITH SIALYLLACTOSE,PH8.0)  1Z4Y  PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ- NEURAMINIDASE(HN) (PH 8.0)  1Z4Z  PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ- NEURAMINIDASE(HN) WITH LIGAND DANA(SOAKED WITH SIALIC ACID, PH7.0))  1Z50  PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ- NEURAMINIDASE(HN) WITH LIGAND DANA (SOAKED WITH SIALIC ACID, PH 8.0)  2BAT  NEURAMINIDASE N2 COMPLEX WITH SIALIC ACID (N -ACTYL NEURAMINIC ACID)  2QWA  THE X-RAY STRUCTURE OF A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWB  THE X-RAY STRUCTURE OF A COMPLEX OF SIALIC ACID AND A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWC  THE X-RAY STRUCTURE OF A COMPLEX OF NEU5AC2EN AND A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWD  THE X-RAY STRUCTURE OF A COMPLEX OF 4- AMINO-NEU5AC2EN AND A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWE  THE X-RAY STRUCTURE OF A COMPLEX OF 4- GUANIDINO-NEU5AC2EN AND A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWF  THE X-RAY STRUCTURE OF A COMPLEX OF N- ACETYL-4-GUANIDINO-6- METHYL(PROPYL) CARBOXAMIDE-4,5-DIHYDRO-2H-PYRAN-2- CARBOXYLIC ACID AND A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWG  THE X-RAY STRUCTURE OF A COMPLEX OF 5- N-ACETYL-4-AMINO-6- DIETHYLCARBOXAMIDE-4,5 -DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID AND A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWH  THE X-RAY STRUCTURE OF A COMPLEX OF 5- N-ACETYL-5-AMINO-3- (1-ETHYLPROPOXY)-1- CYCLOHEXENE-1-CARBOXYLIC ACID (GS4071) AND A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWI  THE X-RAY STRUCTURE OF A COMPLEX OF N- ACETYL-4-GUANIDINO-6- METHYL(PROPYL) CARBOXAMIDE-4,5-DIHYDRO-2H-PYRAN-2- CARBOXYLIC ACID AND WILDTYPE TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWJ  THE X-RAY STRUCTURE OF A COMPLEX OF 5- N-ACETYL-4-AMINO-6- DIETHYLCARBOXAMIDE-4,5 -DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID AND A DRUG RESISTANT VARIANT R292K OF TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2QWK  THE X-RAY STRUCTURE OF A COMPLEX OF 5- N-ACETYL-5-AMINO-3- (1-ETHYLPROPOXY)-1- CYCLOHEXENE-1-CARBOXYLIC ACID (GS4071) AND WILDTYPE TERN N9 INFLUENZA VIRUS NEURAMINIDASE  2SIL  SIALIDASE (NEURAMINIDASE)  2SIM  SIALIDASE (NEURAMINIDASE)  3NN9  NEURAMINIDASE N9 (SIALIDASE) (MUTANT WITH ASN 329 REPLACED BY ASP) (N329D)  4NN9  NEURAMINIDASE N9 (SIALIDASE) (MUTANT WITH ILE 368 REPLACED BY ARG) (I368R)  5NN9  NEURAMINIDASE N9 (SIALIDASE) (MUTANT WITH ALA 369 REPLACED BY ASP) (A369D)  6NN9  NEURAMINIDASE N9 (SIALIDASE) (MUTANT WITH LYS 432 REPLACED BY ASN) (K432N)  7NN9  NATIVE INFLUENZA VIRUS NEURAMINIDASE SUBTYPE N9 (TERN)      Ligand Chemical Component Hide Identifier Formula Name Interactions BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer CA Search  Download  Ca CALCIUM ION   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer SIA Search  Download  C11 H19 N O9 O-SIALIC ACID   Ligand Explorer     External Domain Annotations Hide CATH Classification v3.4.0: 4 Domains - data from CATH   Pfam Classification: 1 Domain - data from 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PQS (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Rudino-Pinera, E.,  Tunnah, P.,  Crennell, S.J.,  Webster, R.G.,  Laver, W.G.,  Garman, E.F. Deposition:   2004-06-25 Release:   2006-01-25 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.08 R-Value: 0.153 (obs.) R-Free: 0.195 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 106.48 α = 90.00  b = 74.00 β = 90.50  c = 106.46 γ = 90.00      Molecule of the Month Hide Influenza Neuraminidase