1VID

CATECHOL O-METHYLTRANSFERASE

Structural Biology Knowledgebase: 1VID SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1VID

Classification: TRANSFERASE (METHYLTRANSFERASE)

Total Structure Weight: 25395.39

Macromolecule Entities
Molecule Chains Length Organism Details
CATECHOL O-METHYLTRANSFERASE A 221 Rattus norvegicus EC#: 2.1.1.6 IUBMB
Gene Name(s): Comt

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAM
Query on SAM

A S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DNC
Query on DNC

A 3,5-DINITROCATECHOL
C6 H4 N2 O6
VDCDWNDTNSWDFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DNC IC50: 12 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.194
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 51.30 α = 90.00
b = 51.30 β = 90.00
c = 168.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-01-05
  • Released Date: 1996-07-11
  • Deposition author(s): Vidgren, J., Svensson, L.A., Liljas, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4