1VCJ

Influenza B virus neuraminidase complexed with 1-(4-Carboxy-2-(3-pentylamino)phenyl)-5-aminomethyl-5-hydroxymethyl-pyrrolidin-2-one

Structural Biology Knowledgebase: 1VCJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1VCJ

Classification: HYDROLASE

Total Structure Weight: 43681.02

Macromolecule Entities
Molecule Chains Length Organism Details
NEURAMINIDASE A 389 Influenza b virus EC#: 3.2.1.18 IUBMB
Fragment: CATALYTIC DOMAIN RESIDUES 78-466
Mutation: K382R
Gene Name(s): NA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IBA
Query on IBA

A 4-[(2R)-2-(AMINOMETHYL)-2-(HYDROXYMETHYL)- 5-OXOPYRROLIDIN-1-YL]-3-[(1-ETHYLPROPYL)AMINO]BENZOIC ACID
1-(4-CARBOXY-2-(3-PENTYLAMINO)PHENYL)-5-AMINOMETHYL- 5-HYDROXYMETHYL-PYRROLIDIN-2-ONE (Synonym)
C18 H27 N3 O4
ZEZFFRWWHKSMEB-GOSISDBHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
IBA N/A in BindingDB
IC50: 26000 nM  BindingMOAD
IC50: 26000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.214
  • Space Group: P 4 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 124.36 α = 90.00
b = 124.36 β = 90.00
c = 71.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-09
  • Released Date: 2004-03-23
  • Deposition author(s): Lommer, B.S., Ali, S.M., Bajpai, S.N., Brouillette, W.J., Air, G.M., Luo, M.
  • Previous versions: 1UJA

Revision History

  • 2011-10-05
    Type: Linkage | Details: removed LINKs
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values