1V9T

Structure of E. coli cyclophilin B K163T mutant bound to succinyl-ALA-PRO-ALA-P-nitroanilide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 1V9T

Classification: ISOMERASE / ISOMERASE INHIBITOR

Total Structure Weight: 36618.12

Macromolecule Entities
Molecule Chains Length Organism Details
cyclophilin B A, B 166 Escherichia coli EC#: 5.2.1.8 IUBMB
Mutation: K163T
Gene Name(s): ppiA rot rotA b3363 JW3326
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
(SIN)APA(NIT) C 5 synthetic

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000400
Query on PRD_000400
C SUCCINYL-ALA-PRO-ALA-P-NITROANILIDE Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.184
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 79.28 α = 90.00
b = 79.28 β = 90.00
c = 56.63 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-02-03
  • Released Date: 2004-09-21
  • Deposition author(s): Konno, M., Sano, Y., Okudaira, K., Kawaguchi, Y., Yamagishi-Ohmori, Y., Fushinobu, S., Matsuzawa, H.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
  • 2012-09-05
    Type: Derived calculations
  • 2012-12-12
    Type: Other