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Structure of E. coli cyclophilin B K163T mutant bound to succinyl-ALA-PRO-ALA-P-nitroanilide
1V9T
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Isomerase/isomerase Inhibitor
    Structure Weight: 36618.47
    Molecule: cyclophilin B
    Polymer: 1 Type: protein Length: 166
    Chains: A, B
    EC#: 5.2.1.8   
    Mutation: K163T
    Organism: Escherichia coli
    Gene Names: ppiA rot rotA b3363 JW3326
    UniProtKB: Protein Feature View | Search PDB | P0AFL3  
    Molecule: (SIN)APA(NIT)
    Polymer: 2 Type: protein Length: 5
    Chains: C
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1J2A  Cyclophilin B K163T mutant 
     
  •   Biologically Interesting Molecules (BIRD) Hide
    Identifier Image Name Type Class Chain ID  
    PRD_000400 Search  PRD_000400 SUCCINYL-ALA-PRO-ALA-P-NITROANILIDE Peptide-like Inhibitor C
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    SIN
    Search 
    SIN C4 H6 O4 nonPolymer
    NIT
    Search 
    NIT C6 H6 N2 O2 nonPolymer
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Konno, M.,  Sano, Y.,  Okudaira, K.,  Kawaguchi, Y.,  Yamagishi-Ohmori, Y.,  Fushinobu, S.,  Matsuzawa, H.

    Deposition:   2004-02-03
    Release:   2004-09-21
    Last Modified (REVDAT):   2012-09-05
     
  •   Revision History    Hide
    Mouse over text for details
    2012-12-12
    Other
    2012-09-05
    Biological assembly
    2011-07-13
    Linkage
    2011-07-13
    Sequence database correspondence
    2011-07-13
    Polymer description
    2011-07-13
    Version format compliance
    2011-07-13
    Atom nomenclature
    2011-07-13
    Binding sites and description
    2011-07-13
    Non-polymer description
    2011-07-13
    Function and keywords
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.70
    R-Value: 0.184 (work)
    R-Free: 0.221
    Space Group: P 32
    Unit Cell:
      Length [Å] Angles [°]
    a = 79.28 α = 90.00 
    b = 79.28 β = 90.00 
    c = 56.63 γ = 120.00