1UZD

CHLAMYDOMONAS,SPINACH CHIMERIC RUBISCO

Structural Biology Knowledgebase: 1UZD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1UZD

Classification: LYASE

Total Structure Weight: 553743.69

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN A, B, E..., H, K, O, R, VA, B, E, H, K, O, R, V 475 Chlamydomonas reinhardtii EC#: 4.1.1.39 IUBMB
Mutation: L46P
Gene Name(s): rbcL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 2 C, F, I..., J, M, P, T, WC, F, I, J, M, P, T, W 134 Chlamydomonas reinhardtii Spinacia oleracea EC#: 4.1.1.39 IUBMB
Details: ONE LOOP OF CHLAMYDOMONAS RUBISCO, RESIDUES GLU46-ASN70 HAS BEEN REPLACED WITH THE CORRESPONDING LOOP FROM SPINACH RUBISCO, RESIDUES THR46 - GLY64
Gene Name(s): RBCS-1 RBCS2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAP
Query on CAP

A, B, E, H, K, O, R, V 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
C6 H14 O13 P2
ITHCSGCUQDMYAI-ZMIZWQJLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, E, F, H, I, J, K, M, O, P, R, T, V, W 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, E, H, K, O, R, V MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 3 Unique
ID Chains Type Formula 2D Diagram Parent
HYP
Query on HYP
A, B, E, H, K, O, R, V L-PEPTIDE LINKING C5 H9 N O3 PRO
KCX
Query on KCX
A, B, E, H, K, O, R, V L-PEPTIDE LINKING C7 H14 N2 O4 LYS
SMC
Query on SMC
A, B, E, H, K, O, R, V L-PEPTIDE LINKING C4 H9 N O2 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.188
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 220.01 α = 90.00
b = 224.08 β = 90.00
c = 111.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-11
  • Released Date: 2005-05-31
  • Deposition author(s): Karkehabadi, S., Spreitzer, R.J., Andersson, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4