Crystal structure of the Newcastle disease virus hemagglutinin-neuraminidase complexed with thiosialoside
1USX
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 151998.77
    Molecule: HEMAGGLUTININ-NEURAMINIDASE GLYCOPROTEIN
    Polymer: 1 Type: protein Length: 454
    Chains: A, B, C
    EC#: 3.2.1.18   
    Fragment: HEAD DOMAIN, RESIDUES 124-577
    Organism: Newcastle disease virus
    Gene Name: HN
    UniProtKB: Protein Feature View | Search PDB | P32884  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Newcastle disease virus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1E8T   STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE 
    1E8U   STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE 
    1E8V   STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE 
    1USR   NEWCASTLE DISEASE VIRUS HEMAGGLUTININ- NEURAMINIDASE COMPLEXED WITH THIOSIALOSIDE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DAN
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    DAN C11 H17 N O8
    2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID
    DAN:1USX
    SIA
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    SIA C11 H19 N O9
    O-SIALIC ACID
    SIA:1USX
    WIA
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    WIA C7 H12 O5 S
    METHYL(6S)-1-THIO-L-MANNO-HEXODIALDO-6,2- PYRANOSIDE
     
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Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Zaitsev, V.,  Itzstein, M.,  Groves, D.,  Kiefel, M.,  Takimoto, T.,  Portner, A.,  Taylor, G.

    Deposition:   2003-12-01
    Release:   2004-03-19
    Last Modified (REVDAT):   2013-11-20
     
  •   Revision History    Hide
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    2013-11-20
    Function and keywords
    2013-11-20
    Biological assembly
    2013-11-20
    Binding sites and description
    2013-11-20
    Refinement description
    2013-11-20
    Geometry validation
    2013-11-20
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.70
    R-Value: 0.225 (obs.)
    R-Free: 0.289
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 115.07 α = 90.00 
    b = 115.07 β = 90.00 
    c = 283.96 γ = 90.00