1USX

Crystal structure of the Newcastle disease virus hemagglutinin-neuraminidase complexed with thiosialoside

Structural Biology Knowledgebase: 1USX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1USX

Classification: HYDROLASE

Total Structure Weight: 151998.77

Macromolecule Entities
Molecule Chains Length Organism Details
HEMAGGLUTININ-NEURAMINIDASE GLYCOPROTEIN A, B, C 454 Newcastle disease virus EC#: 3.2.1.18 IUBMB
Fragment: HEAD DOMAIN, RESIDUES 124-577
Gene Name(s): HN

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIA
Query on SIA

A, B, C O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DAN
Query on DAN

A, B, C 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID
C11 H17 N O8
JINJZWSZQKHCIP-UFGQHTETSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
WIA
Query on WIA

A, B, C METHYL(6S)-1-THIO-L-MANNO-HEXODIALDO-6,2- PYRANOSIDE
C7 H12 O5 S
RAZJTJNGLFDKPL-VOQCIKJUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.225
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 115.07 α = 90.00
b = 115.07 β = 90.00
c = 283.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-01
  • Released Date: 2004-03-19
  • Deposition author(s): Zaitsev, V., Itzstein, M., Groves, D., Kiefel, M., Takimoto, T., Portner, A., Taylor, G.

Revision History

  • 2013-11-20
    Type: Function and keywords | Details: KEYWDS
  • 2013-11-20
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2013-11-20
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2013-11-20
    Type: Refinement description | Details: REMARK 3
  • 2013-11-20
    Type: Geometry validation | Details: REMARK 500
  • 2013-11-20
    Type: Version format compliance | Details: REMARK 4