The crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli
Zhang, R., Kim, Y., Dementieva, I., Duke, N., Stols, L., Donnelly, M., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycerophosphoryl diester phosphodiesterase, periplasmic | 336 | Escherichia coli | Mutation(s): 9  Gene Names: GLPQ, B2239 EC: 3.1.4.46 | ||
UniProt | |||||
Find proteins for P09394 (Escherichia coli (strain K12)) Explore P09394  Go to UniProtKB:  P09394 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09394 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | F [auth A] G [auth A] H [auth A] J [auth B] K [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
MG Query on MG | E [auth A], I [auth B], L [auth C], P [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 62.759 | α = 90 |
b = 118.386 | β = 90 |
c = 242.048 | γ = 90 |
Software Name | Purpose |
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CNS | refinement |
SBC-Collect | data collection |
HKL-2000 | data scaling |
CNS | phasing |