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Structure of the K38A mutant of EcoRV bound to cognate DNA and Mn2+
DOI:10.2210/pdb1stx/pdb   NDB ID: PD0529
1STX
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 63954.83
    Molecule: 5'-D(*AP*AP*AP*GP*AP*T)-3'
    Polymer: 1 Type: dna Length: 6
    Chains: C, E
    Molecule: 5'-D(P*AP*TP*CP*TP*T)-3'
    Polymer: 2 Type: dna Length: 5
    Chains: D, F
    Molecule: Type II restriction enzyme EcoRV
    Polymer: 3 Type: protein Length: 244
    Chains: A, B
    EC#: 3.1.21.4   
    Mutation: K38A
    Details: COMPLEXED WITH CLEAVED DNA DUPLEX
    Organism Escherichia coli
    Gene Name ecoRVR
    UniProtKB:   Protein Feature View | Search PDB | P04390  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
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    MN Mn
    MANGANESE (II) ION
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0529
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Horton, N.C.,  Perona, J.J.

    Deposition:   2004-03-25
    Release:   2004-04-06
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.10
    R-Value: 0.201 (obs.)
    R-Free: 0.262
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 63.71 α = 90.00 
    b = 58.69 β = 107.70 
    c = 82.10 γ = 90.00