1RCO

SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR D-XYLULOSE-2,2-DIOL-1,5-BISPHOSPHATE

Structural Biology Knowledgebase: 1RCO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 1RCO

Classification: LYASE

Total Structure Weight: 541617.38

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE B, E, H..., K, L, O, R, VB, E, H, K, L, O, R, V 475 Spinacia oleracea EC#: 4.1.1.39 IUBMB
Gene Name(s): rbcL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE C, F, I..., M, P, S, T, WC, F, I, M, P, S, T, W 123 Spinacia oleracea EC#: 4.1.1.39 IUBMB
Mutation: K2Q, T6I, Q7L, M9L, R11K, Q109E, V113I
Gene Name(s): RBCS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XDP
Query on XDP

B, E, H, K, L, O, R, V D-XYLULOSE-2,2-DIOL-1,5-BISPHOSPHATE
C5 H14 O12 P2
XXHQHBUKQCAIGV-DMTCNVIQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.239
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 220.60 α = 90.00
b = 221.70 β = 90.00
c = 115.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-10-31
  • Released Date: 1997-03-12
  • Deposition author(s): Taylor, T.C., Andersson, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4