1RBO

SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE

Structural Biology Knowledgebase: 1RBO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.154

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RBO

Classification: LYASE

Total Structure Weight: 270920.75

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE B, E, H, L 475 Spinacia oleracea EC#: 4.1.1.39 IUBMB
Gene Name(s): rbcL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE C, F, I, S 123 Spinacia oleracea EC#: 4.1.1.39 IUBMB
Mutation: K2Q, T6I, Q7L, M9L, R11K, Q109E, V113I
Gene Name(s): RBCS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAP
Query on CAP

B, E, H, L 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
C6 H14 O13 P2
ITHCSGCUQDMYAI-ZMIZWQJLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CAP N/A in BindingDB
Kd: 0.00019 nM  BindingMOAD
Kd: 0.00019 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.154
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.20 α = 90.00
b = 157.20 β = 90.00
c = 201.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-10-31
  • Released Date: 1997-03-12
  • Deposition author(s): Taylor, T.C., Andersson, I.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4