1R3S

Uroporphyrinogen Decarboxylase single mutant D86G in complex with coproporphyrinogen-I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 1R3S

Classification: LYASE

Total Structure Weight: 41434.49

Macromolecule Entities
Molecule Chains Length Organism Details
Uroporphyrinogen Decarboxylase A 367 Homo sapiens EC#: 4.1.1.37 IUBMB
Mutation: D86G
Gene Name(s): UROD Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1CP
Query on 1CP

A COPROPORPHYRINOGEN I
C36 H44 N4 O8
WIUGGJKHYQIGNH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.163
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 102.95 α = 90.00
b = 102.95 β = 90.00
c = 72.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-10-03
  • Released Date: 2003-12-09
  • Deposition author(s): Phillips, J.D., Whitby, F.G., Kushner, J.P., Hill, C.P.

Revision History

  • Version 1_0: 2003-12-09

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2014-03-12

    Type: Non-polymer description