MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNA DOI:10.2210/pdb1r2z/pdb   NDB ID: PD0474

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/dna Structure Weight: 38090.90 Molecule: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' Polymer: 1 Type: dna Length: 12 Chains: B Molecule: 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(DHU)P*GP*TP*CP*TP*AP*CP*C)-3' Polymer: 2 Type: dna Length: 12 Chains: C Molecule: MutM Polymer: 3 Type: protein Length: 274 Chains: A EC#: 3.2.2.23    Mutation: E3Q Organism Geobacillus stearothermophilus Gene Name mutM UniProtKB:   Protein Feature View | Search PDB | P84131         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Geobacillus stearothermophilus   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1L1T  Mutm (Fpg) Bound To Abasic-Site Containing DNA  1L1Z  Mutm (Fpg) Covalent-DNA Intermediate  1L2B  Mutm (Fpg) DNA End-Product Structure  1L2C  Mutm (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex  1L2D  Mutm (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex  1R2Y  MutM (Fpg) bound to 8-oxoguanine (oxoG) containing DNA      Ligand Chemical Component Hide Identifier Formula Name Interactions ZN Search  Download  Zn ZINC ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type UMP Search  C9 H13 N2 O8 P nonPolymer     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   Pfam Classification: 3 Domains - data from Pfam   GO Terms: 17 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD0474     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Fromme, J.C.,  Verdine, G.L. Deposition:   2003-09-30 Release:   2003-10-14 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.63 R-Value: 0.208 (obs.) R-Free: 0.233 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 44.59 α = 90.00  b = 94.23 β = 90.00  c = 102.18 γ = 90.00