MutM (Fpg) bound to 8-oxoguanine (oxoG) containing DNA
DOI:10.2210/pdb1r2y/pdb   NDB ID: PD0473
Primary Citation
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 38145.94
    Molecule: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'
    Polymer: 1 Type: dna Length: 12
    Chains: B
    Molecule: 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'
    Polymer: 2 Type: dna Length: 12
    Chains: C
    Molecule: MutM
    Polymer: 3 Type: protein Length: 274
    Chains: A
    Mutation: E3Q
    Organism: Geobacillus stearothermophilus
    Gene Names: mutM fpg
    UniProtKB: Search PDB | P84131   Protein Feature View
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Geobacillus stearothermophilus   Taxonomy   Expression System: Escherichia coli  
  •   Related PDB Entries Hide
    Identifier Details
    1L1T   Mutm (Fpg) Bound To Abasic-Site Containing DNA 
    1L1Z   Mutm (Fpg) Covalent-DNA Intermediate 
    1L2B   Mutm (Fpg) DNA End-Product Structure 
    1L2C   Mutm (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex 
    1L2D   Mutm (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex 
    1R2Z   MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNA 
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN Zn
  •   Modified Residues Hide
    Identifier Formula Parent Type
    8OG C10 H14 N5 O8 P DG dnaLinking
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0473
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Fromme, J.C.,  Verdine, G.L.

    Deposition:   2003-09-30
    Release:   2003-10-14
    Last Modified (REVDAT):   2009-02-24
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.34
    R-Value: 0.211 (obs.)
    R-Free: 0.257
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 44.29 α = 90.00 
    b = 93.63 β = 90.00 
    c = 102.22 γ = 90.00