1QRK

HUMAN FACTOR XIII WITH STRONTIUM BOUND IN THE ION SITE

Structural Biology Knowledgebase: 1QRK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1QRK

Classification: TRANSFERASE

Total Structure Weight: 166644.47

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (COAGULATION FACTOR XIII) A, B 731 Homo sapiens EC#: 2.3.2.13 IUBMB
Fragment: FULL LENGTH DIMER
Mutation: Q651E
Details: STRONTIUM BOUND IN THE ION SITE
Gene Name(s): F13A1 Gene View F13A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SR
Query on SR

A, B STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.183
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 101.90 α = 90.00
b = 72.32 β = 105.90
c = 135.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-06-14
  • Released Date: 1999-07-02
  • Deposition author(s): Fox, B.A., Yee, V.C., Pederson, L.C., Le Trong, I., Bishop, P.D., Stenkamp, R.E., Teller, D.C.
  • Previous versions: 1BL2

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4