1QPF

FK506 BINDING PROTEIN (12 KDA, HUMAN) COMPLEX WITH L-709,858

Structural Biology Knowledgebase: 1QPF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.243

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1QPF

Classification: ISOMERASE

Total Structure Weight: 25821.98

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (FK506-BINDING PROTEIN) A, D 107 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): FKBP1A Gene View FKBP1 FKBP12

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
858
Query on 858

A, D C32-O-(1-ETHYL-INDOL-5-YL)ASCOMYCIN
858, (Synonym)
C53 H78 N2 O12
CXVGRMOIFTUTMT-IUQQQLKSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
B7G
Query on B7G

A HEPTYL-BETA-D-GLUCOPYRANOSIDE
C13 H26 O6
NIDYWHLDTIVRJT-UJPOAAIJSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
858 N/A in BindingDB
IC50: 27 nM  BindingMOAD
IC50: 27 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.243
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.26 α = 90.00
b = 74.26 β = 90.00
c = 236.45 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-05-24
  • Released Date: 1999-08-16
  • Deposition author(s): Becker, J.W., Rotonda, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values