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Complex between the Lactococcus lactis Fpg and an abasic site containing DNA.
DOI:10.2210/pdb1pjj/pdb   NDB ID: PD0447
1PJJ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 39828.63
    Molecule: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3')
    Polymer: 1 Type: dna Length: 14
    Chains: D
    Molecule: DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3')
    Polymer: 2 Type: dna Length: 14
    Chains: E
    Molecule: Formamidopyrimidine-DNA glycosylase
    Polymer: 3 Type: protein Length: 271
    Chains: A
    EC#: 3.2.2.23    4.2.99.18   
    Mutation: P1G
    Organism Lactococcus lactis
    Gene Names mutM fpg
    UniProtKB:   Protein Feature View | Search PDB | P42371  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Lactococcus lactis   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1EE8  Crystal structure of the free Fpg 
    1K82   
    1KFV  First crystal structure obtained with a blunt 13mer DNA duplex 
    1L1T   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR
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    3DR C5 H11 O6 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0447
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Serre, L.,  Pereira de Jesus, K.,  Boiteux, S.,  Zelwer, C.,  Castaing, B.

    Deposition:   2003-06-03
    Release:   2004-06-08
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Non-polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.90
    R-Value: 0.202 (work)
    R-Free: 0.220
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 91.89 α = 90.00 
    b = 91.89 β = 90.00 
    c = 142.42 γ = 90.00