Crystal structure Complex between the Lactococcus lactis Fpg and an abasic site containing DNA DOI:10.2210/pdb1nnj/pdb   NDB ID: PD0389

1NNJ   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 39694.50 Molecule: 5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*CP*G)-3' Polymer: 1 Type: dna Length: 14 Chains: D Molecule: 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' Polymer: 2 Type: dna Length: 14 Chains: E Molecule: Formamidopyrimidine-DNA glycosylase Polymer: 3 Type: protein Length: 271 Chains: A EC#: 3.2.2.23    4.2.99.18    Mutation: P1G Organism Lactococcus lactis Gene Names mutM fpg UniProtKB:   Protein Feature View | Search PDB | P42371         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Lactococcus lactis   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1EE8  Crystal structure of the free Fpg  1K82    1KFV  First crystal structure obtained with a blunt 13 mer DNA duplex  1L1T        Ligand Chemical Component Hide Identifier Formula Name Interactions GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type PDI Search  C3 H9 O5 P nonPolymer     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   Pfam Classification: 3 Domains - data from Pfam   GO Terms: 12 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD0389     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Serre, L.,  Pereira de Jesus, K.,  Boiteux, S.,  Zelwer, C.,  Castaing, B. Deposition:   2003-01-14 Release:   2003-02-11 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.90 R-Value: 0.215 (work) R-Free: 0.236 Space Group: P 41 21 2 Unit Cell:   Length [Å] Angles [°] a = 92.15 α = 90.00  b = 92.15 β = 90.00  c = 142.53 γ = 90.00