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The Sanglifehrin-Cyclophilin Interaction: Degradation Work, Synthetic Macrocyclic Analogues, X-ray Crystal Structure and Binding Data
1NMK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Isomerase
    Structure Weight: 37554.98
    Molecule: Peptidyl-prolyl cis-trans isomerase A
    Polymer: 1 Type: protein Length: 165
    Chains: A, B
    EC#: 5.2.1.8   
    Organism Homo sapiens
    Gene Names PPIA CYPA
    UniProtKB:   Protein Feature View | Search PDB | P62937  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli str. k12 substr. w3110  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SFM
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    SFM C39 H56 N4 O10
    (13E,15E)-(3S,6S,9R,10R,11S,12S,18S,21S)- 10,12-DIHYDROXY-3-(3-HYDROXYBEN-ZYL)-18-((E)- 3-HYDROXY-1-METHYLPROPENYL)-6-ISOPROPYL-11- METHYL-9-(3-OXO-BUTYL)-19-OXA-1,4,7,25-TETRAAZA- BICYCLO[19.3.1]PENTACOSA-13,15-DIENE-2,5,8,20- TETRAONE
    SFM:1NMK
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    SFM
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    SFM
    N/Ain BindingDB
    IC50: 5.7 nM - data from BindingMOAD  
    IC50: 5.7 nM - data from PDBbind  
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Kallen, J.,  Sedrani, R.,  Wagner, J.

    Deposition:   2003-01-10
    Release:   2003-04-01
    Last Modified (REVDAT):   2011-07-13
     
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    2011-07-13
    Version format compliance
    2011-07-13
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.10
    R-Value: 0.165 (obs.)
    R-Free: 0.189
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 58.20 α = 90.00 
    b = 67.30 β = 90.00 
    c = 78.20 γ = 90.00