1NMB

THE STRUCTURE OF A COMPLEX BETWEEN THE NC10 ANTIBODY AND INFLUENZA VIRUS NEURAMINIDASE AND COMPARISON WITH THE OVERLAPPING BINDING SITE OF THE NC41 ANTIBODY

Structural Biology Knowledgebase: 1NMB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NMB

Classification: COMPLEX (HYDROLASE / IMMUNOGLOBULIN)

Total Structure Weight: 79713.73

Macromolecule Entities
Molecule Chains Length Organism Details
N9 NEURAMINIDASE N 470 Influenza a virus EC#: 3.2.1.18 IUBMB
Gene Name(s): NA
FAB NC10 L 109 Mus musculus Mutation: E3Q, L4M
Details: RESOLUTION OF 2.5 ANGSTROMS
FAB NC10 H 122 Mus musculus Mutation: S7P, V109L
Details: RESOLUTION OF 2.5 ANGSTROMS

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

N N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

N BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

N ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

N CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.210
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 169.40 α = 90.00
b = 169.40 β = 90.00
c = 156.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-01-17
  • Released Date: 1995-09-15
  • Deposition author(s): Malby, R.L., Tulip, W.R., Colman, P.M.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4