1JH7

Semi-reduced Inhibitor-bound Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.399
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1JH7

Classification: HYDROLASE

Total Structure Weight: 22580.80

Macromolecule Entities
Molecule Chains Length Organism Details
cyclic phosphodiesterase A 189 Arabidopsis thaliana EC#: 3.1.4 IUBMB
Gene Name(s): At4g18930 F13C5.100 F13C5_100
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UVC
Query on UVC

A URIDINE-2',3'-VANADATE
C9 H12 N2 O9 V
JSPAHXDHRUTBDP-ODQFIEKDSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.399
  • R-Value Work: 0.214
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 101.14 α = 90.00
b = 101.14 β = 90.00
c = 90.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-27
  • Released Date: 2002-02-06
  • Deposition author(s): Hofmann, A., Grella, M., Botos, I., Filipowicz, W., Wlodawer, A.

Revision History

  • Version 1_0: 2002-02-06

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance