1HYT

RE-DETERMINATION AND REFINEMENT OF THE COMPLEX OF BENZYLSUCCINIC ACID WITH THERMOLYSIN AND ITS RELATION TO THE COMPLEX WITH CARBOXYPEPTIDASE A

Structural Biology Knowledgebase: 1HYT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Observed: 0.157

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1HYT

Classification: HYDROLASE(METALLOPROTEINASE)

Total Structure Weight: 34874.64

Macromolecule Entities
Molecule Chains Length Organism Details
THERMOLYSIN A 316 Bacillus thermoproteolyticus EC#: 3.4.24.27 IUBMB
Gene Name(s): npr

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BZS
Query on BZS

A L-BENZYLSUCCINIC ACID
C11 H12 O4
GTOFKXZQQDSVFH-SECBINFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Observed: 0.157
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.69 α = 90.00
b = 93.69 β = 90.00
c = 131.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-05-04
  • Released Date: 1994-07-31
  • Deposition author(s): Hausrath, A.C., Matthews, B.W.

Revision History

  • 2012-06-13
    Type: Biological assembly | Details: update remark 350
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4