the 2.2 A resolution structure of thermolysin crystallized in presence of potassium thiocyanate
1GXW
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 34910.72
    Molecule: THERMOLYSIN
    Polymer: 1 Type: protein Length: 316
    Chains: A
    EC#: 3.4.24.27   
    Organism: Bacillus thermoproteolyticus
    Gene Name: npr
    UniProtKB: Search PDB | P00800   Protein Feature View
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
     
  •   Related PDB Entries Hide
    Identifier Details
    1FJ3   THERMOLYSIN (50% ACETONE SOAKED) 
    1FJO   THERMOLYSIN (60% ACETONE SOAKED CRYSTALS) 
    1FJQ   THERMOLYSIN (70% ACETONE SOAKED CRYSTALS) 
    1FJT   THERMOLYSIN (50% ACETONITRILE SOAKED CRYSTALS) 
    1FJU   THERMOLYSIN (80% ACETONITRILE SOAKED CRYSTALS) 
    1FJV   THERMOLYSIN (60% ACETONITRILE SOAKED CRYSTALS) 
    1FJW   THERMOLYSIN (50 MM PHENOL SOAKED) 
    1HYT   THERMOLYSIN COMPLEXED WITH BENZYLSUCCINIC ACID (2(S)-BENZYL-3-CARBOXYPROPIONIC ACID) 
    1LNA   THERMOLYSIN COMPLEXED WITH COBALT 
    1LNB   THERMOLYSIN COMPLEXED WITH IRON 
    1LNC   THERMOLYSIN COMPLEXED WITH MANGANESE 
    1LND   THERMOLYSIN COMPLEXED WITH ZINC 
    1LNE   THERMOLYSIN COMPLEXED WITH CADMIUM 
    1LNF   THERMOLYSIN 
    1QF0   THERMOLYSIN COMPLEXED WITH (2-SULPHANYL-3- PHENYLPROPANOYL)-PHE-TYR. PARAMETERS FOR ZN- BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE 
    1QF1   THERMOLYSIN COMPLEXED WITH (2- SULPHANYLHEPTANOYL)-PHE-ALA. PARAMETERS FOR ZN -BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE 
    1QF2   THERMOLYSIN COMPLEXED WITH (2-SULPHANYL-3- PHENYLPROPANOYL)-GLY-(5-PHENYLPROLINE). PARAMETERS FOR ZN- MONODENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE 
    1THL   THERMOLYSIN COMPLEXED WITH A NOVEL GLUTARAMIDE DERIVATIVE, N-(1-(2(R,S)-CARBOXY-4- PHENYLBUTYL) CYCLOPENTYLCARBONYL)-(S)-TRYPTOPHAN 
    1TLI   THERMOLYSIN (2% ISOPROPANOL SOAKED CRYSTALS) 
    1TLP   THERMOLYSIN COMPLEX WITH PHOSPHORAMIDON 
    1TLX   THERMOLYSIN (NATIVE) 
    1TMN   THERMOLYSIN COMPLEX WITH N-(1-CARBOXY-3- PHENYLPROPYL)-L-LEUCYL-L-TRYPTOPHAN 
    1TRL   THERMOLYSIN FRAGMENT 255 - 316 (NMR, 8 STRUCTURES) 
    2TLI   THERMOLYSIN (5% ISOPROPANOL SOAKED CRYSTALS) 
    2TLX   THERMOLYSIN (NATIVE) 
    2TMN   THERMOLYSIN COMPLEX WITH N-PHOSPHORYL-L- LEUCINAMIDE (P-LEU-NH2) 
    3TLI   THERMOLYSIN (10% ISOPROPANOL SOAKED CRYSTALS) 
    3TMN   THERMOLYSIN COMPLEX WITH VAL-TRP (VW) 
    4TLI   THERMOLYSIN (25% ISOPROPANOL SOAKED CRYSTALS) 
    4TLN   THERMOLYSIN COMPLEX WITH L-LEUCYL- HYDROXYLAMINE 
    4TMN   THERMOLYSIN COMPLEX WITH CBZ-PHE==P==-LEU- ALA (ZFPLA) 
    5TLI   THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS) 
    5TLN   THERMOLYSIN COMPLEX WITH HONH-BENZYLMALONYL-L -ALANYLGLYCINE-P-NITROANILIDE 
    5TMN   THERMOLYSIN COMPLEX WITH CBZ-GLY==P==-LEU- LEU (ZG==P==LL) 
    6TLI   THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS) 
    6TMN   THERMOLYSIN COMPLEX WITH CBZ-GLY==P==-(O)- LEU-LEU (ZG==P==(O)LL) 
    7TLI   THERMOLYSIN (90% ISOPROPANOL SOAKED CRYSTALS) 
    7TLN   THERMOLYSIN COMPLEX WITH CH2CO(N-OH)LEU- OCH3 
    8TLI   THERMOLYSIN (100% ISOPROPANOL SOAKED CRYSTALS) 
    8TLN   THERMOLYSIN COMPLEXED WITH VAL-LYS DIPEPTIDE 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Gaucher, J.F.,  Selkti, M.,  Prange, T.,  Tomas, A.

    Deposition:   2002-04-12
    Release:   2002-12-05
    Last Modified (REVDAT):   2013-01-30
     
  •   Revision History    Hide
    Mouse over text for details
    2013-01-30
    Refinement description
    2013-01-30
    Non-polymer description
    2013-01-30
    Other
    2013-01-30
    Binding sites and description
    2013-01-30
    Citation
    2013-01-30
    Biological assembly
    2013-01-30
    Geometry validation
    2013-01-30
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.18
    R-Value: 0.163 (obs.)
    R-Free: 0.215
    Space Group: P 61 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 93.17 α = 90.00 
    b = 93.17 β = 90.00 
    c = 130.63 γ = 120.00