1GXW

the 2.2 A resolution structure of thermolysin crystallized in presence of potassium thiocyanate

Structural Biology Knowledgebase: 1GXW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.163

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GXW

Classification: HYDROLASE

Total Structure Weight: 34910.73

Macromolecule Entities
Molecule Chains Length Organism Details
THERMOLYSIN A 316 Bacillus thermoproteolyticus EC#: 3.4.24.27 IUBMB
Gene Name(s): npr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LYS
Query on LYS

A LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
VAL
Query on VAL

A VALINE
C5 H11 N O2
KZSNJWFQEVHDMF-BYPYZUCNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

A THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.163
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.17 α = 90.00
b = 93.17 β = 90.00
c = 130.63 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-12
  • Released Date: 2002-12-05
  • Deposition author(s): Gaucher, J.F., Selkti, M., Prange, T., Tomas, A.

Revision History

  • 2013-01-30
    Type: Refinement description | Details: REMARK 3
  • 2013-01-30
    Type: Non-polymer description | Details: FORMUL
  • 2013-01-30
    Type: Other | Details: REMARK 525,REMARK 280
  • 2013-01-30
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2013-01-30
    Type: Citation | Details: JRNL
  • 2013-01-30
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2013-01-30
    Type: Geometry validation | Details: REMARK 500
  • 2013-01-30
    Type: Version format compliance | Details: REMARK 4