1GW0

CRYSTAL STRUCTURE OF LACCASE FROM MELANOCARPUS ALBOMYCES IN FOUR COPPER FORM

Structural Biology Knowledgebase: 1GW0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GW0

Classification: OXIDOREDUCTASE

Total Structure Weight: 132161.86

Macromolecule Entities
Molecule Chains Length Organism Details
LACCASE-1 A, B 559 Melanocarpus albomyces EC#: 1.10.3.2 IUBMB
Gene Name(s): LAC1

Small Molecules
Ligands 7 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A, B COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OXY
Query on OXY

A, B OXYGEN MOLECULE
O2
MYMOFIZGZYHOMD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.189
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.51 α = 110.40
b = 72.30 β = 95.23
c = 88.94 γ = 109.74

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-01
  • Released Date: 2002-07-31
  • Deposition author(s): Hakulinen, N., Kiiskinen, L.-L., Kruus, K., Saloheimo, M., Koivula, A., Rouvinen, J.

Revision History

  • 2011-10-19
    Type: Geometry validation | Details: REMARK 500
  • 2011-10-19
    Type: Polymer description | Details: COMPND
  • 2011-10-19
    Type: Sequence database correspondence | Details: DBREF
  • 2011-10-19
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-10-19
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-10-19
    Type: Version format compliance | Details: REMARK 4
  • 2011-10-19
    Type: Refinement description | Details: REMARK 3
  • 2011-10-19
    Type: Other | Details: REMARK 525,REMARK 280
  • 2011-10-19
    Type: Non-polymer description | Details: HETSYN,FORMUL