RUBISCO FROM CHLAMYDOMONAS REINHARDTII
1GK8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Lyase
    Structure Weight: 279495.12
    Molecule: RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN
    Polymer: 1 Type: protein Length: 475
    Chains: A, C, E, G
    EC#: 4.1.1.39   
    Organism: Chlamydomonas reinhardtii
    Gene Name: rbcL
    UniProtKB: Protein Feature View | Search PDB | P00877  
    Molecule: RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
    Polymer: 2 Type: protein Length: 140
    Chains: I, K, M, O
    EC#: 4.1.1.39   
    Organism: Chlamydomonas reinhardtii
    Gene Name: RBCS-1
    UniProtKB: Protein Feature View | Search PDB | P00873  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Chlamydomonas reinhardtii   Taxonomy    
    Polymer: 2
    Scientific Name: Chlamydomonas reinhardtii   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1AA1   ACTIVATED SPINACH RUBISCO IN COMPLEX WITH THE PRODUCT 3-PHOSPHOGLYCERATE 
    1AUS   ACTIVATED UNLIGANDED SPINACH RUBISCO 
    1BWV   ACTIVATED RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH THE REACTION INTERMEDIATE ANALOGUE 2- CARBOXYARABINITOL 1,5-BISPHOSPHATE 
    1BXN   THE CRYSTAL STRUCTURE OF RUBISCO FROM ALCALIGENES EUTROPHUS TO 2.7 ANGSTROMS. 
    1EJ7   CRYSTAL STRUCTURE OF UNACTIVATED TOBACCO RUBISCO WITH BOUND PHOSPHATE IONS 
    1RBA   RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE /OXYGENASE) MUTANT WITH ASP 193 REPLACED BY ASN (D193N) 
    1RBL   RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/ OXYGENASE (RUBISCO) 
    1RBO   SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE 
    1RCO   SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR D-XYLULOSE-2,2-DIOL-1,5- BISPHOSPHATE 
    1RCX   NON-ACTIVATED SPINACH RUBISCO IN COMPLEX WITH ITS SUBSTRATE RIBULOSE-1,5-BISPHOSPHATE 
    1RLC   RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/ OXYGENASE (RUBISCO) COMPLEX WITH 2-CARBOXY-D -ARABINITOL-1,5-BISPHOSPHATE(CABP) 
    1RLD   RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/ OXYGENASE (RUBISCO) 
    1RSC   RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/ OXYGENASE (RUBISCO) 
    1RUS   RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE (SLASH)OXYGENASE) COMPLEX WITH 3- PHOSPHOGLYCERATE 
    1RXO   ACTIVATED SPINACH RUBISCO IN COMPLEX WITH ITS SUBSTRATE RIBULOSE-1,5-BISPHOSPHATE AND CALCIUM 
    2RUS   RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE (SLASH)OXYGENASE) COMPLEX WITH CO2 AND MG+ 
    5RUB   RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE (SLASH)OXYGENASE) 
    8RUC   ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2- CARBOXYARABINITOL BISPHOSPHATE 
    9RUB   RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH) OXYGLUCOSE (RUBISCO) COMPLEXED WITH CO=2=, MG==++==, AND SUBSTRATE RIBULOSE-1,5- BISPHOSPHATE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CAP
    Search 
    Download 
    CAP C6 H14 O13 P2
    2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
    CAP:1GK8
    EDO
    Search 
    Download 
    EDO C2 H6 O2
    1,2-ETHANEDIOL
    MG
    Search 
    Download 
    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    HYP
    Search 
    HYP C5 H9 N O3 PRO lPeptideLinking
    KCX
    Search 
    KCX C7 H14 N2 O4 LYS lPeptideLinking
    SMC
    Search 
    SMC C4 H9 N O2 S CYS lPeptideLinking
    MME
    Search 
    MME C6 H13 N O2 S MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Taylor, T.C.,  Spreitzer, R.J.,  Andersson, I.

    Deposition:   2001-08-09
    Release:   2001-10-24
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.40
    R-Value: 0.149 (obs.)
    R-Free: 0.162
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 171.38 α = 90.00 
    b = 142.64 β = 124.13 
    c = 124.72 γ = 90.00