1G3X

INTERCALATION OF AN 9ACRIDINE-PEPTIDE DRUG IN A DNA DODECAMER

Structural Biology Knowledgebase: 1G3X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1G3X

Classification: DNA

Total Structure Weight: 44967.21


Macromolecule Entities
Molecule Chains Length Organism Details
N(ALPHA)-(9-ACRIDINOYL)-TETRAARGININE-AMIDE M 5 synthetic
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' A, B, C... , D, E, F, G, H, I, J, K, L A, B, C, D, E, F, G, H, I, J, K, L 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B, G, J, K, L MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
9AC
Query on 9AC
M NON-POLYMER C14 H9 N O --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.220
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 66.47 α = 90.00
b = 68.36 β = 90.00
c = 77.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-25
  • Released Date: 2002-08-16
  • Deposition author(s): Malinina, L., Soler-Lopez, M., Aymami, J., Subirana, J.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4