STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
DOI:10.2210/pdb1fka/pdb   NDB ID: RR0017
1FKA
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 725015.90
    Molecule: 16S RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 1518
    Chains: A
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S2
    Polymer: 2 Type: protein Length: 111
    Chains: B
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S3
    Polymer: 3 Type: protein Length: 176
    Chains: C
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S4
    Polymer: 4 Type: protein Length: 209
    Chains: D
    Organism: Thermus thermophilus
    Gene Names: rpsD rps4 TTHA1665
    UniProtKB: Protein Feature View | Search PDB | P80373  
    Molecule: 30S RIBOSOMAL PROTEIN S5
    Polymer: 5 Type: protein Length: 162
    Chains: E
    Organism: Thermus thermophilus
    Gene Names: rpsE TTHA1675
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ5  
    Molecule: 30S RIBOSOMAL PROTEIN S6
    Polymer: 6 Type: protein Length: 101
    Chains: F
    Organism: Thermus thermophilus
    Gene Names: rpsF TTHA0245
    UniProtKB: Protein Feature View | Search PDB | Q5SLP8  
    Molecule: 30S RIBOSOMAL PROTEIN S7
    Polymer: 7 Type: protein Length: 151
    Chains: G
    Organism: Thermus thermophilus
    Gene Names: rpsG rps7 TTHA1696
    UniProtKB: Protein Feature View | Search PDB | P17291  
    Molecule: 30S RIBOSOMAL PROTEIN S8
    Polymer: 8 Type: protein Length: 138
    Chains: H
    Organism: Thermus thermophilus
    Gene Names: rpsH TTHA1678
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ2  
    Molecule: 30S RIBOSOMAL PROTEIN S9
    Polymer: 9 Type: protein Length: 89
    Chains: I
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S10
    Polymer: 10 Type: protein Length: 71
    Chains: J
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S11
    Polymer: 11 Type: protein Length: 70
    Chains: K
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S12
    Polymer: 12 Type: protein Length: 103
    Chains: L
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S13
    Polymer: 13 Type: protein Length: 77
    Chains: M
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S14
    Polymer: 14 Type: protein Length: 26
    Chains: N
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S15
    Polymer: 15 Type: protein Length: 89
    Chains: O
    Organism: Thermus thermophilus
    Gene Names: rpsO TTHA1138
    UniProtKB: Protein Feature View | Search PDB | Q5SJ76  
    Molecule: 30S RIBOSOMAL PROTEIN S16
    Polymer: 16 Type: protein Length: 73
    Chains: P
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S17
    Polymer: 17 Type: protein Length: 84
    Chains: Q
    Organism: Thermus thermophilus
    Molecule: 30S RIBOSOMAL PROTEIN S18
    Polymer: 18 Type: protein Length: 88
    Chains: R
    Organism: Thermus thermophilus
    Gene Names: rpsR TTHA0243
    UniProtKB: Protein Feature View | Search PDB | Q5SLQ0  
    Molecule: 30S RIBOSOMAL PROTEIN S19
    Polymer: 19 Type: protein Length: 93
    Chains: S
    Organism: Thermus thermophilus
    Gene Names: rpsS TTHA1688
    UniProtKB: Protein Feature View | Search PDB | Q5SHP2  
    Molecule: 30S RIBOSOMAL PROTEIN S20
    Polymer: 20 Type: protein Length: 95
    Chains: T
    Organism: Thermus thermophilus
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1A32   S15 ribosomal protein of Th.th. 
    1AN7   S8 ribosomal protein of Th.th. 
    1C05   S4 ribosomal protein of B.st. 
    1EKC   S6,S15,S18 ribosomal proteins of Th.th. 
    1PKP   S5 ribosomal protein of B.st. 
    1QKF   S19 ribosomal protein of Th.th. 
    1RIS   S6 ribosomal protein of Th.th. 
    1RSS   S7 ribosomal protein of Th.th. 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    WO2
    Search 
    Download 
    WO2 O62 P2 W18
    OCTADECATUNGSTENYL DIPHOSPHATE
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UNK
    Search 
    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:RR0017
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers: