1E8K

Cyclophilin 3 Complexed With Dipeptide Ala-Pro

Structural Biology Knowledgebase: 1E8K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1E8K

Classification: ISOMERASE

Total Structure Weight: 18780.54

Macromolecule Entities
Molecule Chains Length Organism Details
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 A 173 Caenorhabditis elegans EC#: 5.2.1.8 IUBMB
Gene Name(s): cyn-3 cyp-3 Y75B12B.5

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PRO
Query on PRO

A PROLINE
C5 H9 N O2
ONIBWKKTOPOVIA-BYPYZUCNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ALA
Query on ALA

A ALANINE
C3 H7 N O2
QNAYBMKLOCPYGJ-REOHCLBHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.183
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 61.03 α = 90.00
b = 61.03 β = 90.00
c = 122.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-25
  • Released Date: 2001-09-20
  • Deposition author(s): Wu, S.Y., Dornan, J., Kontopidis, G., Taylor, P., Walkinshaw, M.D.

Revision History

  • 2013-07-24
    Type: Linkage | Details: LINK
  • 2013-07-24
    Type: Binding sites and description | Details: SITE, REMARK 800
  • 2013-07-24
    Type: Other | Details: CISPEP, REMARK 280, REMARK 610
  • 2013-07-17
    Type: Citation | Details: REMARK 1,JRNL
  • 2013-07-17
    Type: Polymer description | Details: COMPND
  • 2013-07-17
    Type: Linkage | Details: CONECT,LINK
  • 2013-07-17
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2013-07-17
    Type: Atom nomenclature | Details: ATOM,HETATM
  • 2013-07-17
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2013-07-17
    Type: Source and taxonomy | Details: SOURCE
  • 2013-07-17
    Type: Secondary structure | Details: SHEET
  • 2013-07-17
    Type: Version format compliance | Details: REMARK 4
  • 2013-07-17
    Type: Geometry validation | Details: REMARK 500
  • 2013-07-17
    Type: Non-polymer description | Details: FORMUL,HET
  • 2013-07-17
    Type: Data collection | Details: REMARK 200
  • 2013-07-17
    Type: Other | Details: REMARK 375,REMARK 465,TER,REMARK 470,REMARK 900,REMARK 610,CISPEP,REMARK 525,MASTER