1E79

Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 1E79

Classification: HYDROLASE

Total Structure Weight: 374930.31

Macromolecule Entities
Molecule Chains Length Organism Details
ATP SYNTHASE ALPHA CHAIN HEART ISOFORM A, B, C 510 Bos taurus EC#: 3.6.3.14 IUBMB
Mutation: S481G
Gene Name(s): ATP5A1 Gene View ATP5A2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP SYNTHASE BETA CHAIN D, E, F 482 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP SYNTHASE GAMMA CHAIN G 272 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5C1 Gene View ATP5C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP SYNTHASE DELTA CHAIN H 146 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5D Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP SYNTHASE EPSILON CHAIN I 50 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5E Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: ATP synthase (F1c10)


Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, C ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

B, D, F ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DCW
Query on DCW

D DICYCLOHEXYLUREA
C13 H24 N2 O
ADFXKUOMJKEIND-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.225
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 267.20 α = 90.00
b = 107.20 β = 90.00
c = 135.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-25
  • Released Date: 2000-11-03
  • Deposition author(s): Gibbons, C., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

Revision History

  • 2011-08-31
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance
  • 2012-11-28
    Type: Database references
  • 2014-01-22
    Type: Database references