1DMY

COMPLEX BETWEEN MURINE MITOCHONDRIAL CARBONIC ANYHDRASE V AND THE TRANSITION STATE ANALOGUE ACETAZOLAMIDE

Structural Biology Knowledgebase: 1DMY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Observed: 0.170

Literature

Macromolecules
Sequence Display for 1DMY

Classification: LYASE (OXO-ACID)

Total Structure Weight: 57127.32

Macromolecule Entities
Molecule Chains Length Organism Details
MURINE CARBONIC ANHYDRASE V A, B 248 Mus musculus EC#: 4.2.1.1 IUBMB
Mutation: L185M, T225M
Gene Name(s): Ca5a Ca5 Car5 Car5a
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AZM
Query on AZM

A, B 5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE
C4 H6 N4 O3 S2
BZKPWHYZMXOIDC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AZM Ki: 58 - 60 nM (98) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Observed: 0.170
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 48.69 α = 67.65
b = 60.37 β = 75.26
c = 60.44 γ = 75.21

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-10-04
  • Released Date: 1996-04-03
  • Deposition author(s): Boriack-Sjodin, P.A., Christianson, D.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4