1DIL

SIALIDASE FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH APANA AND EPANA INHIBITORS

Structural Biology Knowledgebase: 1DIL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DIL

Classification: GLYCOSIDASE

Total Structure Weight: 42671.77

Macromolecule Entities
Molecule Chains Length Organism Details
SIALIDASE A 381 Salmonella enterica EC#: 3.2.1.18 IUBMB
Mutation: A329D
Gene Name(s): nanH STM0928
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AXP
Query on AXP

A 4-ACETAMIDO-2,4-DIDEXOY-D-GLYCERO-BETA-D- GALACTO-OCTOPYRANOSYLPHOSPHONIC ACID (AN AXIAL PHOSPHONATE)
C10 H20 N O9 P
QITAGYVZDNZULE-HDBWYCHPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EQP
Query on EQP

A (4-ACETAMIDO-2,4-DIDEOXY-D-GLYCERO-ALPHA- D-GALACTO-1-OCTOPYRANOSYL)PHOSPHONIC ACID
C10 H20 N O9 P
QITAGYVZDNZULE-IHICSVBISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.187
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.40 α = 90.00
b = 82.30 β = 90.00
c = 91.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-04-23
  • Released Date: 1996-12-07
  • Deposition author(s): Garman, E.F., Crennell, S.C., Vimr, E.R., Laver, W.G., Taylor, G.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name