1CVZ

CRYSTAL STRUCTURE ANALYSIS OF PAPAIN WITH CLIK148(CATHEPSIN L SPECIFIC INHIBITOR)

Structural Biology Knowledgebase: 1CVZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1CVZ

Classification: HYDROLASE

Total Structure Weight: 23859.97

Macromolecule Entities
Molecule Chains Length Organism Details
PAPAIN A 212 Carica papaya EC#: 3.4.22.2 IUBMB
Fragment: RESIDUES 134-345
Mutation: E47Q, E118Q, E135Q
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C48
Query on C48

A N1-(1-DIMETHYLCARBAMOYL-2-PHENYL-ETHYL)-2- OXO-N4-(2-PYRIDIN-2-YL-ETHYL)-SUCCINAMIDE
C22 H26 N4 O4
ZPFPZRVOBBMZMP-SFHVURJKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.177
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 42.89 α = 90.00
b = 49.91 β = 90.00
c = 95.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-08-24
  • Released Date: 2000-08-30
  • Deposition author(s): Tsuge, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4