HUMAN DNA POLYMERASE BETA COMPLEXED WITH GAPPED DNA AND DDCTP DOI:10.2210/pdb1bpy/pdb   NDB ID: PDE0125

1BPY   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase/dna Structure Weight: 48238.13 Molecule: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') Polymer: 1 Type: dna Length: 16 Chains: T Molecule: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*DOC)-3') Polymer: 2 Type: dna Length: 10 Chains: P Molecule: DNA (5'-D(*GP*TP*CP*GP*G)-3') Polymer: 3 Type: dna Length: 5 Chains: D Molecule: PROTEIN (DNA POLYMERASE BETA) Polymer: 4 Type: protein Length: 335 Chains: A EC#: 2.7.7.7    4.2.99    Organism Homo sapiens Gene Name POLB UniProtKB:   Protein Feature View | Search PDB | P06746         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1BPX    1BPZ        Ligand Chemical Component Hide Identifier Formula Name Interactions DCT Search  Download  C9 H16 N3 O12 P3 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type DOC Search  C9 H14 N3 O6 P DC dnaLinking     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   CATH Classification v3.4.0: 4 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam   GO Terms: 26 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PDE0125     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Sawaya,  H.Pelletier M.R., Prasad,  R., Wilson,  S.H., Kraut,  J. Deposition:   1997-04-15 Release:   1997-06-16 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.20 R-Value: 0.227 (obs.) R-Free: 0.330 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 50.54 α = 90.00  b = 79.82 β = 107.11  c = 54.94 γ = 90.00      Molecule of the Month Hide DNA Polymerase