1A47

CGTASE FROM THERMOANAEROBACTERIUM THERMOSULFURIGENES EM1 IN COMPLEX WITH A MALTOHEXAOSE INHIBITOR

Structural Biology Knowledgebase: 1A47 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1A47

Classification: GLYCOSIDASE

Total Structure Weight: 77053.31

Macromolecule Entities
Molecule Chains Length Organism Details
CYCLODEXTRIN GLYCOSYLTRANSFERASE A 683 Thermoanaerobacterium thermosulfurigenes EC#: 2.4.1.19 IUBMB
Gene Name(s): amyA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACI
Query on ACI

A 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3- TRIOL
C7 H13 N O4
XPHOBMULWMGEBA-VZFHVOOUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
G6D
Query on G6D

A 6-DEOXY-ALPHA-D-GLUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-DVKNGEFBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.186
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 74.00 α = 90.00
b = 97.79 β = 90.00
c = 116.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-02-11
  • Released Date: 1998-06-17
  • Deposition author(s): Uitdehaag, J.C.M., Kalk, K.H., Rozeboom, H.J., Dijkstra, B.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4