Structural and Biochemical Basis for Selective Repression of the Orphan Nuclear Receptor LRH-1 by SHP DOI:10.2210/pdb1zgy/pdb

1ZGY   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transcription Structure Weight: 33302.05 Molecule: Peroxisome proliferator activated receptor gamma Polymer: 1 Type: protein Length: 272 Chains: A Fragment: PPARgamma Ligand Binding Domain Organism Homo sapiens Gene Names PPARG NR1C3 UniProtKB:   Protein Feature View | Search PDB | P37231     Molecule: Nuclear receptor subfamily 0, group B, member 2 Polymer: 2 Type: protein Length: 17 Chains: B Fragment: SHP 2nd LXXLL motif Organism Rattus norvegicus Gene Names Nr0b2 Shp UniProtKB:   Protein Feature View | Search PDB | P97947         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human   Polymer: 2 Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Norway rat       Ligand Chemical Component Hide Identifier Formula Name Interactions BRL Search  Download  C18 H19 N3 O3 S 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL- 2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) BRL Search  Download  EC50: 2.4 - 2880 nM (98 - 100) - data from BindingDB   IC50: 30 - 50000 nM (100) - data from BindingDB   Kd: 4980 nM (100) - data from BindingDB   Ki: 8 - 440 nM (100) - data from BindingDB   IC50: 500 nM - data from BindingMOAD   N/A in PDBbind     External Domain Annotations Hide SCOP Classification v1.75: 1 Domain - data from SCOP   CATH Classification v3.4.0: 1 Domain - data from CATH   Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Li, Y.,  Choi, M.,  Suino, K.,  Kovach, A.,  Daugherty, J.,  Kliewer, S.A.,  Xu, H.E. Deposition:   2005-04-22 Release:   2005-07-26 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.80 R-Value: 0.231 (obs.) R-Free: 0.258 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 102.60 α = 90.00  b = 54.49 β = 97.50  c = 66.50 γ = 90.00