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Structural and Biochemical Basis for Selective Repression of the Orphan Nuclear Receptor LRH-1 by SHP
1ZGY
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 33302.05
    Molecule: Peroxisome proliferator activated receptor gamma
    Polymer: 1 Type: protein Length: 272
    Chains: A
    Fragment: PPARgamma Ligand Binding Domain
    Organism Homo sapiens
    Gene Names PPARG NR1C3
    UniProtKB:   Protein Feature View | Search PDB | P37231  
    Molecule: Nuclear receptor subfamily 0, group B, member 2
    Polymer: 2 Type: protein Length: 17
    Chains: B
    Fragment: SHP 2nd LXXLL motif
    Organism Rattus norvegicus
    Gene Names Nr0b2 Shp
    UniProtKB:   Protein Feature View | Search PDB | P97947  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human  
    Polymer: 2
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Norway rat  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BRL
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    BRL C18 H19 N3 O3 S
    2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL- 2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)
    BRL:1ZGY
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    BRL
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    BRL
    EC50: 2.4 - 2880 nM (98 - 100) - data from BindingDB  
    IC50: 30 - 450 nM (100) - data from BindingDB  
    Kd: 7 - 4980 nM (100) - data from BindingDB  
    Ki: 8 - 440 nM (100) - data from BindingDB  
    IC50: 500 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Li, Y.,  Choi, M.,  Suino, K.,  Kovach, A.,  Daugherty, J.,  Kliewer, S.A.,  Xu, H.E.

    Deposition:   2005-04-22
    Release:   2005-07-26
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.80
    R-Value: 0.231 (obs.)
    R-Free: 0.258
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 102.60 α = 90.00 
    b = 54.49 β = 97.50 
    c = 66.50 γ = 90.00