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Structure of the 4_601_167 Tetranucleosome
DOI:10.2210/pdb1zbb/pdb   NDB ID: PD0639
1ZBB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Structural Protein/dna
    Structure Weight: 431877.00
    Molecule: DNA STRAND 1 (ARBITRARY MODEL SEQUENCE)
    Polymer: 1 Type: dna Length: 347
    Chains: I
    Molecule: DNA STRAND 2 (ARBITRARY MODEL SEQUENCE)
    Polymer: 2 Type: dna Length: 347
    Chains: J
    Molecule: HISTONE H3
    Polymer: 3 Type: protein Length: 135
    Chains: A, E, a, e
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P84233  
    Molecule: Histone H4
    Polymer: 4 Type: protein Length: 102
    Chains: B, F, b, f
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P62799  
    Molecule: Histone H2A.1
    Polymer: 5 Type: protein Length: 129
    Chains: C, G, c, g
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P06897  
    Molecule: Histone H2B.1
    Polymer: 6 Type: protein Length: 125
    Chains: D, H, d, h
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P02281  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 6
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1KX5  Structure of the nucleosome core particle 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0639
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Schalch, T.,  Duda, S.,  Sargent, D.F.,  Richmond, T.J.

    Deposition:   2005-04-08
    Release:   2005-07-12
    Last Modified (REVDAT):   2014-05-14
     
  •   Revision History    Hide
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    2014-05-14
    Other
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   9.00
    R-Value: 0.386 (obs.)
    R-Free: n/a
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 127.68 α = 90.00 
    b = 168.45 β = 90.00 
    c = 237.13 γ = 90.00