1Z5Y

Crystal Structure Of The Disulfide-Linked Complex Between The N-Terminal Domain Of The Electron Transfer Catalyst DsbD and The Cytochrome c Biogenesis Protein CcmG

Structural Biology Knowledgebase: 1Z5Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.235

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Z5Y

Classification: OXIDOREDUCTASE / BIOSYNTHETIC PROTEIN

Total Structure Weight: 33421.86

Macromolecule Entities
Molecule Chains Length Organism Details
Thiol:disulfide interchange protein dsbD D 143 Escherichia coli EC#: 1.8.1.8 IUBMB
Fragment: N-Terminal Domain, Residues 1-143
Mutation: C103S
Gene Name(s): dsbD cutA2 cycZ dipZ b4136 JW5734
Thiol:disulfide interchange protein dsbE E 149 Escherichia coli Fragment: Soluble Domain, Residues 43-185
Mutation: C83S
Gene Name(s): dsbE ccmG yejQ b2195 JW2183

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

D, E CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.235
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.57 α = 90.00
b = 53.17 β = 104.88
c = 63.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-21
  • Released Date: 2005-07-19
  • Deposition author(s): Stirnimann, C.U., Rozhkova, A., Grauschopf, U., Gruetter, M.G., Glockshuber, R., Capitani, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4