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Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1D
1Z5L
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System
    Structure Weight: 91763.63
    Molecule: T-cell surface glycoprotein CD1d antigen
    Polymer: 1 Type: protein Length: 285
    Chains: A, C
    Fragment: extracellular domain
    Organism: Mus musculus
    Gene Names: Cd1d1 Cd1.1
    UniProtKB: Protein Feature View | Search PDB | P11609  
    Molecule: Beta-2-microglobulin
    Polymer: 2 Type: protein Length: 99
    Chains: B, D
    Fragment: extracellular domain
    Organism: Mus musculus
    Gene Name: B2m
    UniProtKB: Protein Feature View | Search PDB | P01887  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Drosophila melanogaster  
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Drosophila melanogaster  
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1CD1  structure of "unliganded" CD1d 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
    PBS
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    PBS C32 H63 N O9
    (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]- 2-AMINO-OCTADECANE-3,4-DIOL
    PBS:1Z5L
    R16
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    R16 C16 H34
    HEXADECANE
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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