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Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1D
1Z5L
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Immune System
    Structure Weight: 91763.63
    Molecule: T-cell surface glycoprotein CD1d antigen
    Polymer: 1 Type: protein Length: 285
    Chains: A, C
    Fragment: extracellular domain
    Organism Mus musculus
    Gene Names Cd1d1 Cd1.1
    UniProtKB:   Protein Feature View | Search PDB | P11609  
    Molecule: Beta-2-microglobulin
    Polymer: 2 Type: protein Length: 99
    Chains: B, D
    Fragment: extracellular domain
    Organism Mus musculus
    Gene Name B2m
    UniProtKB:   Protein Feature View | Search PDB | P01887  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Drosophila melanogaster  
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Drosophila melanogaster  
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
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    Identifier Details
    1CD1  structure of "unliganded" CD1d 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    NAG
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    Download      		NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
    PBS
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    Download      		PBS C32 H63 N O9
    (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]- 2-AMINO-OCTADECANE-3,4-DIOL
    		PBS:1Z5L
    R16
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    Download      		R16 C16 H34
    HEXADECANE
     
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Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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