1YZ3

Structure of human pnmt complexed with cofactor product adohcy and inhibitor SK&F 64139

Structural Biology Knowledgebase: 1YZ3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YZ3

Classification: Transferase

Total Structure Weight: 64865.43

Macromolecule Entities
Molecule Chains Length Organism Details
Phenylethanolamine N-methyltransferase A, B 289 Homo sapiens EC#: 2.1.1.28 IUBMB
Gene Name(s): PNMT Gene View PENT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SKA
Query on SKA

A, B 7,8-DICHLORO-1,2,3,4-TETRAHYDROISOQUINOLINE
SK&F 64139 (Synonym)
C9 H9 Cl2 N
WFPUBEDBBOGGIQ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SKA IC50: 3 - 10000 nM (100) BindingDB
Ki: 1.55 - 300 nM (100) BindingDB

Ki: 1.55 nM  BindingMOAD
Ki: 1.55 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.214
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.90 α = 90.00
b = 93.90 β = 90.00
c = 188.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-27
  • Released Date: 2006-02-07
  • Deposition author(s): Wu, Q., Gee, C.L., Lin, F., Martin, J.L., Grunewald, G.L., McLeish, M.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4