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crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b
 
 
DOI:10.2210/pdb1yyl/pdb
1YYL
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Viral Protein/immune System
    Structure Weight: 174812.02
     
    Molecule:Exterior membrane glycoprotein(GP120)
    Polymer:1Type:polypeptide(L)Length:313
    Chains:G, P
    Fragment:core
    Mutation:deletion mutant
    Molecule:antibody 17b light chain
    Polymer:2Type:polypeptide(L)Length:214
    Chains:L, Q
    Fragment:ANTIGEN-BINDING FRAGMENT, FAB
    Molecule:antibody 17b heavy chain
    Polymer:3Type:polypeptide(L)Length:229
    Chains:H, R
    Fragment:ANTIGEN-BINDING FRAGMENT, FAB
    Molecule:CD4M33, scorpion-toxin mimic of CD4
    Polymer:4Type:polypeptide(L)Length:27
    Chains:M, S
     
     
  •  
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    Polymer: 1
    Scientific Name: Human immunodeficiency virus 1 Go to NCBI Taxonomy entry Expression System: Drosophila melanogaster  
    Polymer: 2
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Mus musculus  
    Polymer: 3
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Mus musculus  
    Polymer: 4
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
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    Id Details
    1YYM  F23 complexed with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    NAG     N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 3DLigand Explorer Link out to Ligand Expos:NAG Link out to SuperLigands:NAG Link out to SuperHapten:NAG
    NDG     2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE C8 H15 N O6 3DLigand Explorer Link out to Ligand Expos:NDG Link out to SuperLigands:NDG Link out to SuperHapten:NDG
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    MPT BETA-MERCAPTOPROPIONIC ACID(type: nonPolymer) C3 H6 O2 S 3D Ligand Explorer Link out to Ligand Expos:MPT Link out to SuperLigands:MPT Link out to SuperHapten:MPT 2D
    BIF (R)-2-AMINO-3-(4-PHENYLCYCLOHEXYL)PROPANOIC ACID (parent: PHE)(type: lPeptideLinking) C15 H15 N O2 3D Ligand Explorer Link out to Ligand Expos:BIF Link out to SuperLigands:BIF Link out to SuperHapten:BIF 2D
     
     
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Biological assembly 1 assigned by authors